Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.1e-156 556.6 296 100.0
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 5.0e-152 541.2 304 95.7
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 9.1e-138 493.8 310 84.8
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.7e-137 492.3 310 84.5
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 7.7e-137 490.7 310 84.2
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.2e-136 489.2 310 83.9
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 5.0e-136 488.0 310 84.2
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.9e-135 486.1 310 82.9
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 6.1e-134 481.1 310 82.3
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 9.8e-132 473.8 310 82.6
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 4.9e-131 471.5 310 81.6
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 5.4e-130 468.0 310 81.0
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.4e-122 443.4 310 76.1
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.7e-120 436.4 310 75.2
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.1e-119 433.7 312 74.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 4.3e-119 431.8 310 73.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 5.6e-119 431.4 310 72.9
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.2e-118 430.3 310 74.5
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.6e-118 429.9 309 74.8
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.8e-118 429.1 310 72.9
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 4.7e-118 428.3 310 72.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 6.2e-118 427.9 310 73.5
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 8.0e-118 427.6 310 72.9
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 5.2e-117 424.9 310 72.6
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 5.2e-117 424.9 310 73.5
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.5e-116 423.3 310 72.9
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 2.0e-116 422.9 317 72.2
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 2.0e-116 422.9 317 72.2
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 4.4e-116 421.8 310 73.5
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 4.4e-116 421.8 310 71.6
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 9.8e-116 420.6 310 72.3
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.7e-115 419.9 310 71.9
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.2e-115 419.5 310 73.2
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 6.4e-115 417.9 310 70.6
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.3e-115 417.5 310 72.6
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.1e-114 417.2 318 71.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.1e-114 417.2 310 71.3
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.1e-114 417.2 310 72.9
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.1e-114 417.2 310 72.3
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.9e-114 416.4 310 71.9
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.9e-114 416.4 311 71.7
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.9e-114 416.4 310 71.6
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.2e-114 415.6 310 72.3
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 9.2e-114 414.1 311 72.0
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 9.2e-114 414.1 312 73.1
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.2e-114 414.1 318 70.8
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.0e-113 412.9 318 70.8
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 6.6e-112 407.9 316 71.2
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.1e-111 407.1 318 68.6
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-111 406.4 318 70.1
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 2.5e-111 406.0 318 71.1
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.3e-111 405.6 318 70.4
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 4.3e-111 405.2 310 70.6
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 7.3e-111 404.4 318 68.9
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 7.3e-111 404.4 318 69.8
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.2e-110 403.7 318 68.9
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.1e-110 402.9 310 69.7
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.6e-110 402.1 310 69.4
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.7e-110 401.7 310 70.6
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 4.7e-110 401.7 319 68.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.7e-110 401.7 318 68.6
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.3e-109 399.4 319 68.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 3.1e-109 399.1 318 67.9
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.0e-109 398.7 318 67.6
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 5.2e-109 398.3 319 69.6
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 6.8e-109 397.9 310 69.4
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 8.9e-109 397.5 309 68.6
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.2e-108 397.1 362 63.0
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 2.6e-108 396.0 310 68.4
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.4e-108 395.6 296 74.0
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 4.4e-108 395.2 318 67.0
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 4.4e-108 395.2 310 69.4
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 7.5e-108 394.4 311 69.8
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 9.8e-108 394.0 310 68.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 9.8e-108 394.0 318 68.9
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.7e-107 393.3 310 68.4
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 3.7e-107 392.1 318 67.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.9e-107 391.7 310 68.7
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.1e-106 390.6 311 69.5
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 4.6e-105 385.2 312 67.3
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 4.6e-105 385.2 285 71.9
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.6e-105 385.2 345 62.6
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.7e-104 383.3 307 68.1
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.3e-104 382.9 311 67.8
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.1e-104 381.7 310 67.7
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 6.6e-104 381.3 312 67.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 2.5e-103 379.4 318 65.4
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.3e-103 378.6 310 65.8
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 7.3e-103 377.9 312 67.0
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 1.6e-102 376.7 310 65.5
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 6.2e-102 374.8 312 66.7
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 8.1e-102 374.4 310 65.8
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 6.8e-101 371.3 315 64.4
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.0e-100 369.8 315 64.8
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.4e-100 369.0 278 72.7
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.7e-99 366.7 294 68.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.8e-99 365.5 316 63.6
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 6.4e-99 364.8 294 68.0
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.9e-98 363.2 297 67.7
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 3.2e-98 362.5 294 67.7
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.6e-94 350.1 312 62.5
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.1e-94 349.7 310 63.5
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.6e-94 349.0 321 61.4
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 4.7e-94 348.6 286 67.5
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.1e-94 347.8 319 63.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.8e-93 346.7 279 66.7
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.4e-93 346.3 281 67.6
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 3.1e-93 345.9 286 66.4
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 6.9e-93 344.7 262 71.0
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 5.4e-90 335.1 276 64.5
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.7e-89 332.8 256 69.5
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.0e-88 330.9 296 63.9
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.3e-88 330.5 262 67.9
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 8.7e-88 327.8 310 60.3
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.1e-87 327.4 296 62.5
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 4.8e-86 322.0 740 35.0
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.8e-85 320.1 315 58.4
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 9.9e-84 314.3 262 63.4
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.7e-83 313.5 313 60.1
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.2e-82 308.9 296 60.5
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 4.6e-81 305.4 256 64.5
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.6e-73 280.4 228 66.7
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 4.3e-71 272.3 242 61.2
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.1e-70 268.1 221 63.3
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 6.5e-67 258.5 315 49.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-63 246.9 391 45.8
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.6e-62 243.8 320 45.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.5e-58 229.9 310 47.7
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.2e-52 211.1 289 45.7
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 2.6e-52 209.9 164 71.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.3e-47 193.0 156 69.9
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.4e-45 186.8 121 85.1
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.5e-44 184.1 122 83.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 4.5e-44 182.6 186 58.6
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.7e-43 180.6 245 50.2
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.3e-38 164.5 230 45.2
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.3e-38 162.2 132 68.9
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 1.6e-36 157.5 243 47.7
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.1e-34 151.4 113 66.4
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 8.0e-33 145.2 141 61.0
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.3e-27 127.9 91 73.6
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.8e-27 126.3 110 63.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.1e-26 124.8 152 54.6
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 3.2e-26 123.2 309 32.7
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 4.7e-25 119.4 93 66.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 5.7e-23 112.5 100 58.0
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.8e-22 110.2 89 62.9
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.1e-21 108.2 109 58.7
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.4e-21 107.1 116 58.6
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.4e-15 86.3 67 67.2
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.8e-14 83.6 62 74.2
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.4e-08 64.7 75 50.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 8.9e-08 62.0 104 35.6


User provided reference genes

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