Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.1e-299 1031.6 523 100.0
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 5.7e-276 953.7 503 96.2
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 3.0e-208 728.8 509 74.7
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 5.3e-197 691.4 505 72.1
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 7.6e-196 687.6 507 71.0
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 3.2e-194 682.2 509 70.5
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 5.5e-194 681.4 511 70.1
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 1.6e-193 679.9 500 71.0
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 2.1e-193 679.5 508 70.7
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 2.9e-187 659.1 487 70.6
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 1.4e-181 640.2 508 67.3
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 1.4e-165 587.0 422 70.6
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 1.4e-162 577.0 504 59.5
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 3.2e-154 549.3 504 56.9
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 5.7e-151 538.5 501 56.5
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 7.7e-148 528.1 492 57.1
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 8.0e-145 518.1 501 56.3
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.8e-144 516.9 520 57.1
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 1.3e-139 500.7 506 55.1
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.7e-139 500.4 497 56.3
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 2.3e-139 500.0 496 55.0
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.5e-138 497.3 532 53.0
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 1.9e-138 496.9 499 54.9
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 5.5e-138 495.4 497 55.3
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 1.0e-136 491.1 502 57.0
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 6.8e-136 488.4 499 54.5
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.2e-135 487.6 498 55.0
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 4.4e-135 485.7 497 52.9
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 7.5e-135 485.0 534 51.5
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.7e-134 483.8 522 53.3
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 3.7e-134 482.6 501 54.5
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.4e-133 480.7 504 54.0
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.8e-133 480.3 501 54.3
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 5.4e-133 478.8 510 52.9
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 2.7e-132 476.5 510 52.7
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.3e-131 474.2 500 55.6
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.3e-131 474.2 500 55.4
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 2.3e-131 473.4 498 53.6
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.1e-130 471.1 502 53.6
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.3e-130 469.2 500 54.8
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.0e-128 464.5 498 54.6
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 8.9e-128 461.5 500 51.0
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 1.2e-127 461.1 504 51.4
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 3.7e-126 456.1 496 51.6
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 6.4e-126 455.3 497 51.9
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.4e-125 454.1 521 50.5
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 5.4e-125 452.2 501 50.5
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 1.6e-124 450.7 504 49.8
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 6.6e-123 445.3 488 49.4
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 2.5e-122 443.4 496 50.6
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 9.5e-122 441.4 509 49.1
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 3.6e-121 439.5 441 55.8
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.4e-120 437.6 512 51.0
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 8.9e-120 434.9 503 49.3
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 3.4e-119 433.0 504 51.8
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 4.4e-119 432.6 507 47.3
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 5.8e-119 432.2 507 50.5
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 6.4e-118 428.7 500 49.0
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 8.3e-118 428.3 504 51.2
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.9e-117 427.2 502 48.6
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 9.2e-117 424.9 503 49.7
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 1.2e-116 424.5 504 48.4
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 2.7e-116 423.3 515 46.4
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 3.5e-116 422.9 501 49.1
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 7.8e-116 421.8 502 50.6
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.7e-115 420.6 503 50.3
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.1e-114 417.9 500 46.6
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.1e-114 417.9 438 50.9
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.5e-114 417.5 504 50.2
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 1.5e-114 417.5 583 44.3
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 7.3e-114 415.2 505 48.9
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 7.3e-114 415.2 503 47.3
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 1.2e-113 414.5 505 50.1
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 1.4e-112 411.0 489 45.8
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 2.6e-111 406.8 503 48.9
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 5.8e-111 405.6 508 44.5
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 9.9e-111 404.8 509 46.8
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 1.7e-110 404.1 503 49.3
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 8.3e-110 401.7 504 47.8
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 2.4e-109 400.2 535 46.2
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 2.5e-106 390.2 514 46.3
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 3.0e-99 366.7 441 49.9
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 7.3e-98 362.1 425 48.7
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 3.4e-95 353.2 257 70.4
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 1.3e-94 351.3 495 44.6
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 4.2e-93 346.3 294 62.6
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 1.6e-89 334.3 492 43.5
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 6.2e-89 332.4 513 42.5
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 3.1e-88 330.1 428 43.5
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 2.7e-84 317.0 498 41.2
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 4.6e-84 316.2 470 40.9
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 7.9e-84 315.5 372 51.1
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.1e-82 311.6 367 49.3
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.9e-82 310.8 405 45.2
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 2.5e-74 283.9 513 39.0
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 2.0e-71 274.2 497 38.2
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 1.3e-67 261.5 212 61.8
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 1.8e-67 261.2 209 62.2
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 5.1e-67 259.6 570 33.2
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 6.5e-62 242.7 319 45.8
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 6.5e-62 242.7 512 34.4
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 9.4e-61 238.8 359 42.3
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.0e-54 218.8 296 40.5
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 4.7e-52 209.9 497 33.6
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 6.7e-51 206.1 277 44.4
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-50 205.3 225 53.8
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 1.5e-50 204.9 518 28.2
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 2.8e-49 200.7 124 74.2
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.1e-42 178.7 124 70.2
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 6.3e-41 172.9 109 75.2
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.7e-38 164.9 118 67.8
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.0e-35 155.6 133 61.7
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 4.0e-35 153.7 181 42.5
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 7.2e-29 132.9 83 77.1
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 3.6e-28 130.6 70 90.0
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.4e-16 92.0 168 38.7
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.7e-15 87.8 45 88.9
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 2.7e-15 87.8 109 50.5
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 4.3e-13 80.5 55 70.9
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 6.1e-12 76.6 144 38.9
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 1.4e-08 65.5 47 66.0
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 3.9e-06 57.4 48 62.5


User provided reference genes

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