Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-243 845.9 421 100.0
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.7e-215 750.4 427 89.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 5.6e-165 584.7 424 72.2
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 2.1e-164 582.8 431 72.9
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 6.2e-164 581.3 423 71.9
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.2e-162 577.0 425 69.9
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.5e-162 576.6 423 71.4
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 7.6e-162 574.3 430 70.9
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 8.4e-161 570.9 427 71.0
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 6.0e-159 564.7 423 70.0
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 2.8e-156 555.8 422 68.5
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.4e-139 500.4 426 62.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 5.8e-138 495.0 435 60.0
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.6e-132 476.9 432 60.0
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-131 474.2 432 58.8
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 1.8e-131 473.4 428 60.0
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 3.1e-131 472.6 433 59.4
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.6e-130 469.5 433 58.7
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 3.4e-130 469.2 477 54.5
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.3e-129 467.2 436 57.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 2.5e-128 463.0 436 58.5
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 4.2e-128 462.2 429 58.7
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.6e-127 460.3 430 59.5
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.6e-127 460.3 428 57.0
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 3.5e-127 459.1 428 57.2
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.8e-126 456.8 429 55.7
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 8.7e-126 454.5 431 57.8
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 7.4e-125 451.4 425 57.2
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.6e-124 450.3 428 57.9
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.2e-124 449.9 427 58.5
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 8.2e-124 448.0 422 58.3
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 3.1e-123 446.0 432 54.2
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 4.1e-123 445.7 433 56.6
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 4.1e-123 445.7 433 55.0
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 5.3e-123 445.3 430 56.3
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 5.3e-123 445.3 422 55.7
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 9.0e-123 444.5 428 57.2
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 2.6e-122 443.0 427 55.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.5e-122 442.2 427 56.4
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 2.9e-121 439.5 427 54.3
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.4e-120 437.2 427 54.8
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.9e-120 436.8 427 56.0
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.9e-120 436.8 434 56.2
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 2.5e-120 436.4 427 55.0
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.2e-120 436.0 426 57.3
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 5.5e-120 435.3 426 55.6
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 7.2e-120 434.9 427 54.8
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 9.3e-120 434.5 438 54.1
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.2e-119 434.1 423 56.3
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.2e-119 434.1 434 54.4
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 2.1e-119 433.3 435 55.2
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 3.6e-119 432.6 423 56.0
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.6e-119 432.6 427 54.6
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 3.6e-119 432.6 425 56.7
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 4.6e-119 432.2 429 55.7
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 3.9e-118 429.1 434 53.2
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 3.9e-118 429.1 427 54.1
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.9e-118 429.1 440 52.5
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.1e-118 428.7 434 53.2
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 5.1e-118 428.7 429 54.3
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 6.7e-118 428.3 435 53.8
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 8.8e-118 427.9 432 53.5
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.5e-117 426.4 428 54.9
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.3e-116 424.1 434 53.0
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.7e-116 423.7 427 55.3
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 2.2e-116 423.3 420 55.5
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-116 422.5 434 52.5
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.7e-116 422.5 485 51.1
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 6.3e-116 421.8 412 58.0
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.1e-115 421.0 434 52.1
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.1e-115 421.0 434 52.1
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.1e-115 421.0 429 53.8
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.4e-115 420.6 436 53.7
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.4e-115 419.9 421 54.4
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.9e-115 418.3 427 55.0
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 9.1e-115 417.9 435 53.6
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.5e-114 417.2 428 54.4
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.0e-114 416.8 428 53.5
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 3.4e-114 416.0 349 63.6
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 3.4e-114 416.0 427 54.1
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.5e-114 415.6 425 55.3
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.8e-110 403.7 416 53.4
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.5e-109 400.6 407 54.5
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.3e-108 397.5 426 51.9
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 4.8e-108 395.6 418 53.8
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 8.2e-108 394.8 426 52.3
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.8e-107 393.7 451 49.4
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.5e-106 390.6 424 53.8
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.6e-106 389.8 420 51.7
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.1e-104 384.4 417 51.1
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.4e-104 384.0 404 52.0
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.2e-103 380.9 429 51.3
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.0e-102 377.9 425 52.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 3.9e-102 375.9 425 52.7
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 8.8e-102 374.8 422 49.8
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.5e-101 374.0 434 50.5
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 4.4e-101 372.5 424 52.1
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 4.8e-100 369.0 493 46.5
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.8e-99 367.1 425 52.0
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 3.1e-99 366.3 428 50.2
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 5.3e-99 365.5 450 48.2
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 4.5e-98 362.5 445 46.3
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.8e-94 350.5 311 56.6
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 2.6e-93 346.7 445 46.5
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 2.2e-92 343.6 401 52.6
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.1e-91 341.3 339 55.2
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.2e-87 327.8 430 45.3
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 6.8e-86 322.0 303 57.1
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.2e-85 321.2 395 46.3
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 5.4e-83 312.4 483 40.6
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 7.7e-82 308.5 372 47.0
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 4.2e-80 302.8 435 41.4
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-72 278.1 443 42.4
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 9.5e-72 275.0 457 38.1
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.8e-71 273.5 287 52.3
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.2e-69 268.1 431 42.5
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.0e-67 258.8 417 39.8
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.9e-64 250.8 476 34.5
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 3.6e-63 246.5 507 34.5
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.2e-58 231.5 431 36.7
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 6.8e-54 215.7 214 50.0
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.5e-53 214.5 352 40.6
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 4.4e-53 213.0 246 49.6
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.9e-51 207.6 181 58.0
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 9.2e-51 205.3 156 62.8
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.0e-50 202.6 305 37.4
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.2e-47 192.6 168 57.1
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 1.2e-45 188.3 112 77.7
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-42 177.6 168 53.6
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.7e-41 174.5 191 53.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 3.0e-33 147.1 83 84.3
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.2e-29 135.2 179 49.7
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 2.7e-26 124.0 181 43.6
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.5e-24 118.2 105 61.9
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.5e-24 118.2 105 61.9
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 2.1e-23 114.4 290 30.7
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.2e-18 98.6 96 50.0
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 6.7e-17 92.8 143 38.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 1.9e-16 91.3 56 82.1
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.9e-16 91.3 56 82.1
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.1e-15 87.8 65 61.5
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 2.8e-15 87.4 114 44.7
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.2e-13 82.0 82 48.8
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.6e-13 79.3 52 71.2
arahy.Tifrunner.gnm1.ann1.2CLZ47 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.0e-09 68.9 68 55.9
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.4e-08 62.8 149 35.6


User provided reference genes

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