Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 6.1e-115 417.5 216 100.0
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 4.7e-99 364.8 216 90.3
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 2.8e-51 206.1 213 59.2
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 3.6e-51 205.7 224 57.6
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 6.2e-51 204.9 218 58.3
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 6.2e-51 204.9 221 57.0
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 8.1e-51 204.5 215 58.1
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 2.3e-50 203.0 218 58.3
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 6.8e-50 201.4 218 54.6
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 5.8e-49 198.4 217 56.2
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 5.8e-49 198.4 218 56.9
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 8.4e-48 194.5 222 52.3
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 1.6e-46 190.3 222 53.2
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 3.5e-46 189.1 224 55.4
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 1.7e-45 186.8 219 52.1
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 5.1e-45 185.3 224 51.3
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 6.6e-45 184.9 225 53.3
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 2.5e-44 183.0 213 51.2
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 5.6e-44 181.8 213 53.1
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 5.6e-44 181.8 221 53.4
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 5.6e-44 181.8 222 50.5
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 3.6e-43 179.1 221 50.7
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 1.1e-42 177.6 222 50.9
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 1.4e-42 177.2 226 52.7
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 1.8e-42 176.8 224 52.7
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 3.1e-42 176.0 218 52.3
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 4.0e-42 175.6 223 52.0
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 4.0e-42 175.6 222 49.1
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 8.9e-42 174.5 223 51.1
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 8.9e-42 174.5 219 48.9
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 8.9e-42 174.5 219 49.8
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 1.2e-41 174.1 217 53.0
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 2.0e-41 173.3 229 50.2
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 3.4e-41 172.6 220 46.8
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 2.2e-40 169.9 224 46.0
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 3.8e-40 169.1 227 47.1
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 3.8e-40 169.1 226 46.5
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 3.8e-40 169.1 222 48.6
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 3.8e-40 169.1 222 48.6
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 8.4e-40 167.9 218 49.1
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 8.4e-40 167.9 222 48.6
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 1.4e-39 167.2 232 51.3
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.4e-39 167.2 223 48.9
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 1.9e-39 166.8 217 50.2
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 1.9e-39 166.8 221 47.1
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 3.2e-39 166.0 216 50.0
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 7.1e-39 164.9 220 48.6
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 1.2e-38 164.1 211 49.3
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 2.7e-38 162.9 213 47.9
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 6.0e-38 161.8 219 48.9
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 6.0e-38 161.8 220 49.1
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 7.8e-38 161.4 224 49.1
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 1.3e-37 160.6 218 49.1
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 1.3e-37 160.6 222 48.6
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 1.7e-37 160.2 225 48.0
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 3.0e-37 159.5 223 47.1
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 8.7e-37 157.9 240 44.2
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 1.5e-36 157.1 214 48.6
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 1.5e-36 157.1 224 47.8
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 1.9e-36 156.8 227 44.5
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.9e-36 156.8 224 46.9
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 4.3e-36 155.6 220 46.8
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 5.6e-36 155.2 230 46.5
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.3e-35 154.1 224 46.9
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 2.8e-35 152.9 214 45.8
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 3.6e-35 152.5 227 45.4
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 4.8e-35 152.1 227 44.9
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 2.4e-34 149.8 221 48.4
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 3.1e-34 149.4 218 47.7
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 4.0e-34 149.1 217 47.0
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 5.3e-34 148.7 215 45.6
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 5.3e-34 148.7 228 44.3
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 6.9e-34 148.3 230 46.1
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 9.0e-34 147.9 263 39.9
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 1.2e-33 147.5 164 51.8
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 4.5e-33 145.6 211 46.4
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 9.9e-33 144.4 224 44.6
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 1.7e-32 143.7 222 45.5
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 1.7e-32 143.7 224 44.2
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 2.9e-32 142.9 224 43.8
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 3.8e-32 142.5 167 53.9
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 8.4e-32 141.4 230 42.2
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 3.2e-31 139.4 224 43.8
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 5.4e-31 138.7 223 43.0
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 5.4e-31 138.7 227 45.4
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 9.3e-31 137.9 220 42.3
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 9.3e-31 137.9 240 43.3
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 4.6e-30 135.6 200 46.5
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.8e-29 133.7 220 42.7
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 1.8e-29 133.7 189 45.0
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 3.3e-28 129.4 217 40.1
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 7.4e-28 128.3 230 42.6
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 2.1e-27 126.7 226 39.8
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 4.0e-26 122.5 219 37.9
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 1.3e-24 117.5 219 42.0
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 2.2e-24 116.7 227 37.9
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 6.4e-24 115.2 127 56.7
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 8.7e-21 104.8 131 47.3
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 8.7e-21 104.8 236 38.1
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 1.1e-20 104.4 323 31.9
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.3e-19 100.9 230 37.4
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 1.6e-19 100.5 133 47.4
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 8.1e-19 98.2 222 32.4
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.4e-18 97.4 167 46.1
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 3.4e-17 92.8 218 32.1
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 2.9e-16 89.7 113 46.9
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 8.4e-16 88.2 108 47.2
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 3.2e-15 86.3 237 30.8
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 6.0e-14 82.0 224 32.6
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 1.1e-12 77.8 92 53.3
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 1.9e-12 77.0 243 29.6
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 5.7e-12 75.5 53 64.2
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 7.4e-12 75.1 92 52.2
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 3.8e-08 62.8 116 41.4
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 3.8e-08 62.8 49 61.2
CBR_g17172 Chara braunii HOM05D006456 ORTHO05D007588 5.5e-07 58.9 102 30.4
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 2.1e-06 57.0 89 46.1
Thhalv10015519m.g Eutrema salsugineum HOM05D000984 ORTHO05D001096 2.1e-06 57.0 78 35.9


User provided reference genes

Program Settings