Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.5e-302 1040.4 507 100.0
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.0e-274 948.0 463 99.1
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 7.5e-273 943.3 461 99.1
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 4.8e-264 914.1 469 95.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-227 792.3 400 97.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.1e-212 743.4 458 75.8
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.1e-212 743.4 458 76.2
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 3.3e-212 741.9 458 76.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 6.2e-211 737.6 458 75.3
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.5e-209 733.0 458 75.3
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.3e-208 729.9 449 77.3
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 2.9e-208 728.8 472 73.9
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 8.4e-208 727.2 458 74.5
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.2e-207 725.3 460 74.6
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.1e-207 724.2 458 74.2
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.1e-207 724.2 458 74.2
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 9.3e-207 723.8 466 73.6
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.3e-205 719.2 458 73.4
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.3e-205 719.2 439 77.9
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.0e-205 718.8 461 73.8
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.5e-204 716.5 458 74.2
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 3.3e-204 715.3 428 79.2
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 5.6e-204 714.5 458 73.8
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.1e-203 712.6 427 79.4
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.1e-203 712.6 460 73.5
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 6.2e-203 711.1 450 74.7
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 8.1e-203 710.7 427 77.8
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 8.1e-203 710.7 442 74.7
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.1e-202 710.3 458 74.0
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 4.0e-202 708.4 426 76.5
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.0e-201 706.1 458 73.1
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.0e-201 706.1 458 72.3
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.6e-201 705.7 427 77.5
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.0e-200 703.7 458 72.5
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.0e-200 703.7 460 71.1
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.9e-200 702.2 439 76.1
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.4e-199 699.9 461 70.5
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.5e-199 699.1 448 73.7
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.1e-199 697.6 465 72.7
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.7e-198 695.7 458 70.7
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 6.0e-198 694.5 456 71.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.0e-197 693.7 448 73.0
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 5.1e-197 691.4 441 73.5
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 8.7e-197 690.6 457 70.7
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 2.5e-196 689.1 458 69.0
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.1e-195 686.0 458 68.6
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.7e-195 685.3 458 69.0
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 4.0e-194 681.8 457 69.1
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 5.3e-194 681.4 438 73.3
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 5.3e-194 681.4 446 71.7
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.9e-192 675.6 459 68.4
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 3.8e-192 675.2 454 69.8
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-191 673.3 462 69.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.5e-191 672.5 447 71.6
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.2e-191 672.2 445 70.1
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.9e-189 665.2 463 69.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 5.1e-189 664.8 448 71.2
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.9e-188 662.9 430 72.8
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.5e-188 662.5 463 67.0
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.7e-188 661.4 452 69.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 7.4e-188 661.0 449 68.8
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 4.8e-187 658.3 456 68.0
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-186 657.1 450 69.3
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.3e-186 654.8 451 69.4
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.6e-185 652.5 406 75.1
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 4.5e-185 651.7 456 67.3
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.0e-184 650.6 462 66.9
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.7e-184 649.8 456 67.3
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 3.2e-183 645.6 468 66.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 8.8e-181 637.5 438 70.1
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 4.3e-180 635.2 455 67.7
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 7.4e-180 634.4 384 76.3
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 2.2e-179 632.9 456 66.0
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.7e-179 632.1 478 64.6
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.1e-178 630.6 458 63.3
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.8e-178 629.8 456 65.8
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.4e-178 629.4 458 67.5
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 6.9e-178 627.9 473 63.0
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 9.1e-178 627.5 460 64.6
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.0e-177 626.3 459 64.1
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 2.0e-177 626.3 448 65.8
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.3e-176 623.6 459 63.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.2e-176 622.9 462 62.8
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.9e-176 622.5 461 64.0
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.2e-174 617.1 458 64.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.1e-174 616.3 479 64.3
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 6.1e-174 614.8 461 63.8
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 7.9e-174 614.4 461 62.7
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 5.1e-173 611.7 463 62.6
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 6.7e-173 611.3 466 63.9
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 6.7e-173 611.3 463 62.6
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 6.7e-173 611.3 463 62.6
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 6.7e-173 611.3 463 62.4
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 4.4e-172 608.6 463 62.6
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 4.4e-172 608.6 459 63.8
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.5e-169 600.1 463 62.2
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.9e-169 598.2 369 75.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 2.2e-168 596.3 435 63.2
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.5e-167 593.6 491 60.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.1e-166 589.7 468 62.0
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 7.4e-164 581.3 385 71.4
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.7e-163 578.9 401 67.6
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 5.3e-162 575.1 420 64.0
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.5e-161 572.4 474 58.6
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.3e-160 570.5 390 68.7
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.7e-158 562.8 380 72.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 6.8e-157 558.1 451 57.9
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.6e-156 556.2 403 65.3
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.6e-156 556.2 396 66.4
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.4e-156 555.8 490 56.9
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 2.8e-155 552.7 555 52.3
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.0e-153 546.6 472 57.4
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.5e-151 539.7 414 71.5
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.1e-150 536.6 421 62.5
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.2e-148 530.8 435 57.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 4.4e-148 528.9 434 55.5
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 5.0e-144 515.4 430 54.9
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.9e-135 486.9 290 81.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 3.3e-135 486.1 437 56.5
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 2.4e-130 469.9 408 59.6
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 3.0e-120 436.4 289 71.3
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 8.6e-120 434.9 346 59.0
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.3e-119 433.0 346 59.0
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 8.9e-117 424.9 471 47.6
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 6.0e-113 412.1 343 60.1
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.7e-112 410.6 458 49.6
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 8.4e-107 391.7 271 67.5
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 9.3e-106 388.3 371 50.4
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 4.2e-90 336.3 202 73.3
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.5e-90 335.9 447 38.0
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.3e-88 330.5 434 40.6
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 9.3e-82 308.5 212 70.3
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 5.1e-80 302.8 274 58.4
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.2e-75 287.3 175 80.6
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.7e-59 234.6 217 62.2
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 9.7e-55 218.8 119 80.7
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 3.8e-51 206.8 269 42.4
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.1e-50 205.3 194 53.1
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.8e-43 180.3 239 45.6
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.9e-42 177.9 237 45.6
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 9.4e-42 175.6 157 58.6
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-36 158.7 109 67.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.7e-36 157.5 99 75.8
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.7e-36 157.5 207 42.5
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.7e-33 147.5 234 38.0
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 8.3e-30 136.0 85 69.4
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.4e-29 134.4 237 38.8
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.3e-22 109.4 85 63.5
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 2.4e-21 107.8 70 74.3
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.3e-18 97.4 71 59.2
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.1e-17 94.7 57 73.7
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 3.1e-16 90.9 136 36.0
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.1e-10 72.4 78 51.3
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.3e-08 64.7 33 84.8
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.0e-07 61.6 61 57.4
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.4e-07 60.5 42 64.3


User provided reference genes

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