Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 5.9e-197 690.6 342 100.0
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.8e-169 599.4 349 88.0
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 2.3e-169 599.0 350 87.7
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 2.6e-152 542.3 349 78.8
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.4e-150 536.6 349 76.8
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 7.8e-149 530.8 349 76.2
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 4.0e-145 518.5 351 75.5
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.3e-143 513.5 349 73.9
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 7.1e-142 507.7 349 73.6
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 1.3e-140 503.4 360 72.5
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 8.1e-138 494.2 349 71.1
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 2.8e-130 469.2 300 78.0
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 3.1e-129 465.7 360 68.3
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 7.3e-123 444.5 349 65.6
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 6.2e-122 441.4 349 65.3
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 4.5e-120 435.3 349 64.5
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 5.8e-120 434.9 348 63.2
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 4.9e-119 431.8 349 63.6
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 4.2e-118 428.7 349 63.9
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 1.6e-117 426.8 349 63.6
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 1.0e-116 424.1 349 63.0
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 1.3e-116 423.7 349 62.8
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 5.1e-116 421.8 349 62.5
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.1e-115 420.6 349 62.5
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.5e-115 419.5 349 62.2
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 5.6e-115 418.3 349 62.8
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 5.6e-115 418.3 349 62.8
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 2.1e-114 416.4 348 61.5
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 8.1e-114 414.5 345 63.5
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 1.2e-112 410.6 349 60.2
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 2.6e-112 409.5 349 60.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 9.9e-112 407.5 398 55.5
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 9.9e-112 407.5 343 60.6
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.3e-111 407.1 343 60.6
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 1.7e-111 406.8 350 61.7
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.2e-111 406.4 351 60.7
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.1e-109 399.8 363 58.4
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 1.3e-108 397.1 340 60.9
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 2.5e-107 392.9 349 58.7
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.3e-107 392.5 349 60.7
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 9.6e-107 391.0 349 57.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 9.6e-107 391.0 382 55.2
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 9.6e-107 391.0 363 57.9
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 7.6e-104 381.3 356 59.0
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 8.4e-103 377.9 348 57.5
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 4.2e-102 375.6 358 57.8
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 7.9e-101 371.3 322 58.7
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 1.1e-97 360.9 341 57.8
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 1.1e-97 360.9 349 55.3
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 1.4e-97 360.5 349 55.0
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.8e-97 360.1 349 56.4
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 6.9e-97 358.2 352 55.7
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 7.6e-96 354.8 349 54.2
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 1.0e-95 354.4 349 54.2
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 1.3e-95 354.0 343 56.0
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.3e-95 354.0 349 53.0
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 2.2e-95 353.2 349 52.4
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 2.9e-95 352.8 349 52.1
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 8.5e-95 351.3 349 53.3
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.1e-94 350.9 349 55.3
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 1.4e-94 350.5 349 54.4
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 7.2e-94 348.2 355 51.8
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 7.2e-94 348.2 341 54.5
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 3.6e-93 345.9 293 59.7
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 6.1e-93 345.1 341 54.0
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 1.0e-92 344.4 351 53.0
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 3.0e-92 342.8 345 55.1
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.1e-91 340.9 345 54.8
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 1.5e-91 340.5 355 51.3
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 3.3e-91 339.3 351 52.7
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 6.3e-90 335.1 355 50.7
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 1.4e-89 334.0 349 51.3
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.8e-89 333.6 350 50.6
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.2e-88 330.9 362 50.6
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 4.5e-88 328.9 350 50.3
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 5.9e-88 328.6 348 50.0
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 5.9e-88 328.6 344 52.9
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 5.9e-88 328.6 319 54.9
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 8.5e-87 324.7 351 51.0
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 7.9e-85 318.2 366 47.5
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.4e-84 317.4 349 50.1
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 3.9e-84 315.8 348 49.1
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 8.8e-84 314.7 339 52.5
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 1.3e-82 310.8 349 51.3
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.1e-81 307.8 348 48.9
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.1e-81 307.8 349 49.6
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 6.9e-81 305.1 574 36.8
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 1.2e-80 304.3 357 49.6
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 5.0e-79 298.9 369 46.1
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 8.5e-79 298.1 354 49.4
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.9e-78 297.0 348 50.0
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 5.5e-78 295.4 371 44.5
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.5e-70 270.8 292 50.3
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.1e-69 266.9 337 46.0
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.3e-66 257.7 337 42.7
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 1.0e-63 248.1 157 80.9
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 8.0e-61 238.4 198 60.6
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 5.2e-60 235.7 326 41.7
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 1.4e-57 227.6 259 48.3
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 3.5e-56 223.0 247 49.4
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 4.7e-45 186.0 152 65.8
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 4.4e-43 179.5 132 71.2
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 7.0e-41 172.2 195 52.3
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 2.7e-40 170.2 158 58.9
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 4.1e-33 146.4 345 32.8
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 5.1e-31 139.4 322 33.5
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 9.5e-30 135.2 102 62.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 1.6e-29 134.4 323 31.6
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.0e-27 127.5 165 44.2
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 4.4e-27 126.3 155 53.5
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 3.7e-26 123.2 348 30.5
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.3e-22 109.8 82 58.5
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.2e-21 108.2 68 76.5
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 2.8e-21 107.1 273 32.6
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 2.4e-20 104.0 161 40.4
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 6.0e-16 89.4 405 26.7
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 9.9e-11 72.0 74 51.4
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 2.2e-10 70.9 234 29.5
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 2.4e-09 67.4 58 58.6
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 7.1e-09 65.9 72 48.6
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 7.8e-08 62.4 73 47.9
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 8.7e-07 58.9 73 47.9


User provided reference genes

Program Settings