Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 3.9e-140 501.5 264 100.0
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 3.9e-140 501.5 264 100.0
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 3.5e-96 355.5 234 81.2
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 4.5e-96 355.1 234 81.6
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 7.7e-96 354.4 234 82.1
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 2.7e-93 345.9 234 79.9
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 8.0e-93 344.4 234 79.1
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.2e-91 340.5 234 78.6
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 7.5e-91 337.8 234 78.2
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 2.4e-89 332.8 231 75.8
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 7.0e-89 331.3 232 74.6
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 7.0e-89 331.3 237 75.1
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 9.1e-89 330.9 232 76.3
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.2e-88 330.5 234 74.4
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.5e-88 328.6 231 75.8
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.7e-88 327.8 239 72.4
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.3e-87 327.0 233 74.7
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.3e-87 327.0 233 74.7
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.7e-87 326.6 239 74.9
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.7e-87 326.6 238 73.5
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.2e-87 326.2 234 73.1
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 5.0e-87 325.1 236 73.3
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.1e-86 323.9 234 73.9
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.1e-86 323.9 234 73.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.1e-86 323.9 230 73.5
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.5e-86 323.6 234 73.5
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.9e-86 323.2 233 73.0
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 1.9e-86 323.2 234 73.5
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 2.5e-86 322.8 237 71.7
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 7.2e-86 321.2 239 74.9
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.6e-85 320.1 255 68.2
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.6e-85 320.1 244 70.5
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.7e-85 319.3 231 73.6
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 2.7e-85 319.3 231 74.0
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 6.1e-85 318.2 237 70.9
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 8.0e-85 317.8 235 72.8
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 6.8e-84 314.7 237 68.8
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 2.0e-83 313.2 237 70.5
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 5.7e-83 311.6 234 70.1
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 5.7e-83 311.6 234 70.9
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 7.5e-83 311.2 233 73.8
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.3e-82 310.5 234 70.5
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.7e-82 310.1 234 70.1
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.2e-82 309.7 234 70.5
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 2.2e-82 309.7 234 70.9
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 2.2e-82 309.7 234 70.9
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.2e-82 309.7 234 70.1
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.2e-82 309.7 238 69.7
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 2.2e-82 309.7 283 61.1
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.2e-82 309.7 234 70.1
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.2e-82 309.7 234 70.5
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 2.8e-82 309.3 234 70.9
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 2.8e-82 309.3 234 70.9
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 3.7e-82 308.9 234 70.1
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 4.9e-82 308.5 234 70.9
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 4.9e-82 308.5 231 68.4
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.1e-81 307.4 185 85.9
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 1.4e-81 307.0 234 69.7
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.8e-81 306.6 232 71.1
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 1.8e-81 306.6 234 69.2
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 2.4e-81 306.2 234 69.2
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 4.1e-81 305.4 237 68.4
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 4.1e-81 305.4 239 68.6
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 5.4e-81 305.1 234 69.7
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 9.2e-81 304.3 237 67.9
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.2e-80 303.9 229 70.3
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.6e-80 303.5 234 68.8
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.6e-80 303.5 232 69.8
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 7.7e-80 301.2 234 68.4
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.7e-79 300.1 185 82.2
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.7e-79 300.1 200 77.0
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 8.6e-79 297.7 220 74.1
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.9e-78 296.6 188 80.3
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.5e-78 296.2 238 67.6
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.6e-77 293.5 312 53.8
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 6.1e-77 291.6 261 60.9
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 8.0e-77 291.2 222 71.2
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.2e-76 288.5 237 63.7
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 6.8e-76 288.1 204 76.0
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.2e-75 287.3 273 58.2
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.0e-75 286.6 194 75.3
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 7.5e-75 284.6 237 63.3
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.3e-74 283.9 234 67.5
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.4e-73 279.6 194 73.7
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 4.1e-73 278.9 194 73.7
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 9.2e-73 277.7 209 68.9
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.0e-72 276.6 230 64.8
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.7e-72 276.2 231 66.2
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.7e-72 276.2 211 69.2
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 3.5e-72 275.8 205 70.7
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 5.9e-72 275.0 233 61.8
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 5.9e-72 275.0 195 70.8
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.0e-71 274.2 164 82.9
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.3e-71 273.1 231 62.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.9e-71 272.3 211 68.7
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 8.6e-71 271.2 234 61.1
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.3e-70 268.9 215 67.4
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 5.6e-70 268.5 234 60.7
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.2e-69 267.3 163 81.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.6e-69 266.9 234 65.4
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 8.0e-69 264.6 258 59.3
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-68 263.8 233 61.4
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 3.1e-68 262.7 237 59.1
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.1e-68 262.7 237 59.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 3.1e-68 262.7 237 59.1
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 4.0e-68 262.3 237 59.9
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-67 260.8 237 59.5
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.5e-67 260.4 237 58.6
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 4.9e-66 255.4 167 79.6
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.0e-64 248.4 223 63.7
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.4e-60 237.3 148 80.4
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.8e-60 236.9 207 66.2
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.8e-60 236.9 189 69.8
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 4.4e-59 232.3 212 58.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.4e-59 232.3 188 64.9
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.9e-58 229.6 228 51.8
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 6.4e-58 228.4 235 51.5
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 1.4e-57 227.3 147 75.5
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.9e-57 226.9 223 58.3
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.6e-56 223.8 227 50.7
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 6.0e-56 221.9 235 48.1
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 2.3e-52 209.9 170 61.2
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.4e-51 205.7 194 60.8
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 9.9e-51 204.5 219 51.1
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 9.9e-51 204.5 226 50.0
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 3.5e-48 196.1 123 79.7
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.3e-47 194.1 132 74.2
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 3.9e-47 192.6 132 71.2
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 5.1e-39 165.6 102 80.4
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 8.7e-39 164.9 220 48.6
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.9e-38 163.7 104 76.9
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 2.8e-37 159.8 108 77.8
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.0e-36 156.0 126 62.7
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 6.9e-36 155.2 223 43.0
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 2.2e-34 150.2 134 59.0
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 8.4e-34 148.3 99 78.8
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 3.6e-29 132.9 248 39.9
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 4.9e-26 122.5 214 36.4
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 2.4e-20 103.6 98 61.2
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 3.1e-20 103.2 207 32.9
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-19 101.3 144 43.1
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.0e-19 100.5 63 76.2
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 5.8e-19 99.0 74 63.5
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 9.3e-17 91.7 56 92.9
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 3.9e-15 86.3 51 82.4
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.3e-13 81.3 215 30.7
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.3e-13 81.3 215 30.7
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.4e-12 77.8 46 80.4
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.6e-11 73.6 53 69.8
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 3.4e-11 73.2 52 71.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 5.9e-11 72.4 54 64.8
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.0e-10 71.6 195 30.3
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 2.3e-07 60.5 46 69.6
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 3.9e-07 59.7 50 54.0


User provided reference genes

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