Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 4.1e-87 324.7 165 100.0
arahy.Tifrunner.gnm1.ann1.W3A71Z Arachis hypogaea HOM05D006666 ORTHO05D008276 2.3e-50 202.6 105 96.2
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 9.9e-33 144.1 165 52.7
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 2.5e-28 129.4 168 53.0
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 7.3e-28 127.9 165 49.7
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 1.7e-24 116.7 168 50.6
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 2.2e-24 116.3 156 47.4
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 2.9e-24 115.9 166 46.4
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 5.4e-23 111.7 155 45.2
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 5.4e-23 111.7 103 58.3
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 5.4e-23 111.7 103 59.2
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 1.0e-21 107.5 155 45.2
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 1.8e-21 106.7 166 43.4
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 3.9e-21 105.5 166 44.6
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 4.3e-20 102.1 151 45.7
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 9.6e-20 100.9 111 54.1
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 3.6e-19 99.0 110 49.1
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 1.8e-18 96.7 110 50.0
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 3.1e-18 95.9 145 46.2
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 3.1e-18 95.9 99 51.5
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 5.3e-18 95.1 152 40.1
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 9.0e-18 94.4 118 47.5
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 1.2e-17 94.0 99 51.5
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 1.5e-17 93.6 100 51.0
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 1.5e-17 93.6 101 50.5
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 2.0e-17 93.2 100 49.0
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 2.6e-17 92.8 152 40.1
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 3.4e-17 92.4 101 49.5
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 3.4e-17 92.4 107 50.5
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 4.5e-17 92.0 100 52.0
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 4.5e-17 92.0 100 52.0
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 5.8e-17 91.7 109 46.8
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 7.6e-17 91.3 100 51.0
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 7.6e-17 91.3 101 51.5
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 9.9e-17 90.9 100 50.0
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 9.9e-17 90.9 115 49.6
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 9.9e-17 90.9 142 40.8
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 1.3e-16 90.5 144 43.1
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 1.3e-16 90.5 99 48.5
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 1.7e-16 90.1 103 48.5
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.7e-16 90.1 108 46.3
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 1.7e-16 90.1 152 38.2
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 2.2e-16 89.7 98 49.0
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 2.2e-16 89.7 99 48.5
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.9e-16 89.4 108 46.3
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.9e-16 89.4 108 46.3
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 2.9e-16 89.4 155 40.0
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 3.8e-16 89.0 150 39.3
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 3.8e-16 89.0 103 48.5
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 3.8e-16 89.0 103 48.5
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 3.8e-16 89.0 103 48.5
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 4.9e-16 88.6 100 50.0
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 4.9e-16 88.6 102 48.0
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 4.9e-16 88.6 102 48.0
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 4.9e-16 88.6 102 48.0
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 4.9e-16 88.6 151 39.7
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 6.4e-16 88.2 100 50.0
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 6.4e-16 88.2 102 48.0
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 6.4e-16 88.2 102 48.0
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 6.4e-16 88.2 102 48.0
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 6.4e-16 88.2 60 68.3
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 6.4e-16 88.2 108 46.3
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 6.4e-16 88.2 108 46.3
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 8.4e-16 87.8 100 49.0
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 1.1e-15 87.4 100 50.0
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 1.1e-15 87.4 97 48.5
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 1.1e-15 87.4 99 46.5
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 1.4e-15 87.0 99 46.5
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 1.4e-15 87.0 100 51.0
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 2.4e-15 86.3 100 49.0
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 2.4e-15 86.3 101 48.5
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 2.4e-15 86.3 122 41.8
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 2.4e-15 86.3 99 46.5
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 3.2e-15 85.9 100 51.0
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 3.2e-15 85.9 103 47.6
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 4.2e-15 85.5 103 47.6
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 4.2e-15 85.5 119 44.5
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 7.1e-15 84.7 98 50.0
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 7.1e-15 84.7 72 59.7
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 7.1e-15 84.7 133 41.4
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 7.1e-15 84.7 100 47.0
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 1.2e-14 84.0 100 49.0
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 1.2e-14 84.0 101 45.5
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 1.2e-14 84.0 103 48.5
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 1.6e-14 83.6 99 47.5
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 2.1e-14 83.2 60 66.7
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 2.1e-14 83.2 100 48.0
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 2.7e-14 82.8 61 63.9
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 4.6e-14 82.0 60 71.7
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 6.0e-14 81.6 102 45.1
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 7.9e-14 81.3 60 68.3
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 7.9e-14 81.3 60 68.3
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 7.9e-14 81.3 100 47.0
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 7.9e-14 81.3 100 47.0
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 2.3e-13 79.7 114 42.1
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 2.3e-13 79.7 114 42.1
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 3.0e-13 79.3 103 44.7
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 3.0e-13 79.3 93 48.4
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 3.9e-13 79.0 98 44.9
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 3.9e-13 79.0 125 42.4
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 5.1e-13 78.6 99 45.5
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 8.7e-13 77.8 149 39.6
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 1.1e-12 77.4 113 44.2
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 1.5e-12 77.0 102 44.1
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 1.9e-12 76.6 99 46.5
Aqoxy3G04334 Aquilegia oxysepala HOM05D006666 ORTHO05D008276 1.9e-12 76.6 101 44.6
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 1.9e-12 76.6 122 42.6
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 4.3e-12 75.5 63 60.3
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 7.4e-12 74.7 100 44.0
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 9.6e-12 74.3 115 41.7
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 1.3e-11 73.9 113 40.7
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 1.3e-11 73.9 146 42.5
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 1.1e-10 70.9 138 39.1
COL.COLO4_37022 Corchorus olitorius HOM05D006666 ORTHO05D008276 5.8e-09 65.1 52 67.3
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 5.8e-09 65.1 66 53.0
Hma1.2p1_0816F.1_g222980 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 1.9e-07 60.1 57 54.4
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 1.2e-06 57.4 49 53.1


User provided reference genes

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