Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.4e-78 296.6 193 100.0
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 6.2e-18 95.1 206 40.3
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.1e-17 94.4 202 38.1
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 9.8e-16 87.8 203 40.9
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 4.1e-14 82.4 203 40.9
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 1.6e-13 80.5 201 36.8
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 4.3e-11 72.4 199 33.2
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 5.6e-11 72.0 196 33.7
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 5.6e-11 72.0 196 33.7
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 7.3e-11 71.6 185 33.0
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 2.1e-10 70.1 205 32.2
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.8e-10 69.7 36 86.1
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 4.7e-10 68.9 194 36.6
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 8.1e-10 68.2 190 34.7
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 1.1e-09 67.8 185 33.0
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 1.8e-09 67.0 194 32.5
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 3.1e-09 66.2 204 32.4
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 4.0e-09 65.9 196 32.1
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 4.0e-09 65.9 91 50.5
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 4.0e-09 65.9 198 33.3
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 6.8e-09 65.1 58 56.9
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 8.9e-09 64.7 66 56.1
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 8.9e-09 64.7 39 71.8
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.2e-08 64.3 37 75.7
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.2e-08 64.3 37 75.7
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.2e-08 64.3 37 75.7
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 1.5e-08 63.9 40 77.5
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 2.0e-08 63.5 39 74.4
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.6e-08 63.2 189 35.4
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 3.4e-08 62.8 38 71.1
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 3.4e-08 62.8 36 77.8
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 4.4e-08 62.4 39 71.8
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 4.4e-08 62.4 39 71.8
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 4.4e-08 62.4 200 31.0
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 5.8e-08 62.0 36 75.0
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 5.8e-08 62.0 39 71.8
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 5.8e-08 62.0 39 71.8
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 7.6e-08 61.6 36 75.0
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 7.6e-08 61.6 36 75.0
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 7.6e-08 61.6 36 75.0
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 7.6e-08 61.6 73 49.3
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.3e-07 60.8 36 75.0
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.3e-07 60.8 36 75.0
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 1.3e-07 60.8 36 75.0
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.3e-07 60.8 32 81.2
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.3e-07 60.8 197 31.5
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 1.7e-07 60.5 93 40.9
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 1.7e-07 60.5 38 71.1
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 1.7e-07 60.5 57 54.4
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 2.2e-07 60.1 37 75.7
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 2.9e-07 59.7 77 42.9
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.9e-07 59.7 36 72.2
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 2.9e-07 59.7 34 79.4
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 2.9e-07 59.7 196 35.2
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 2.9e-07 59.7 190 31.1
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 2.9e-07 59.7 36 72.2
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 3.7e-07 59.3 78 39.7
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 6.4e-07 58.5 194 34.5
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 6.4e-07 58.5 195 30.3
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 8.4e-07 58.2 34 76.5
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 8.4e-07 58.2 34 76.5
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 1.4e-06 57.4 67 43.3
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.4e-06 57.4 30 86.7
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.9e-06 57.0 209 29.7
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 2.4e-06 56.6 84 39.3
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 5.4e-06 55.5 99 35.4
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 7.1e-06 55.1 39 64.1
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 9.2e-06 54.7 33 69.7


User provided reference genes

Program Settings