Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UG5UID Arachis hypogaea HOM05D008089 ORTHO05D000166 6.1e-181 637.5 354 100.0
arahy.Tifrunner.gnm1.ann1.G9T3SU Arachis hypogaea HOM05D008089 ORTHO05D000166 7.3e-158 560.8 339 94.1
Ca_27244_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 4.6e-35 152.9 225 40.0
Ca_04905_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 1.7e-34 151.0 225 40.0
Psat1g133560 Pisum sativum HOM05D008089 ORTHO05D026066 1.8e-31 141.0 200 43.0
arahy.Tifrunner.gnm1.ann1.4RS8DG Arachis hypogaea HOM05D008089 ORTHO05D000166 4.0e-31 139.8 264 35.2
Glyma.13G045500 Glycine max HOM05D008089 ORTHO05D000166 8.9e-31 138.7 287 35.2
Lalb_Chr08g0233261 Lupinus albus HOM05D008089 ORTHO05D000166 1.2e-30 138.3 240 36.2
Glyma.15G196300 Glycine max HOM05D008089 ORTHO05D000166 1.5e-30 137.9 265 36.6
Lalb_Chr08g0233361 Lupinus albus HOM05D008089 ORTHO05D000166 2.6e-30 137.1 219 37.9
TPR.G1873 Trifolium pratense HOM05D008089 ORTHO05D000166 1.7e-29 134.4 170 45.9
TPR.G1875 Trifolium pratense HOM05D008089 ORTHO05D000166 2.2e-29 134.0 168 45.8
Medtr4g107170 Medicago truncatula HOM05D008089 ORTHO05D000166 6.4e-29 132.5 161 44.7
Lj6g0015605 Lotus japonicus HOM05D008089 ORTHO05D000166 8.3e-29 132.1 160 45.0
Lj6g0011242 Lotus japonicus HOM05D008089 ORTHO05D000166 5.4e-28 129.4 162 43.8
Glyma.19G051700 Glycine max HOM05D008089 ORTHO05D000166 7.1e-28 129.0 296 33.1
Lj1g0009381 Lotus japonicus HOM05D008089 ORTHO05D000166 1.6e-27 127.9 163 46.0
Lj1g0019614 Lotus japonicus HOM05D008089 ORTHO05D000166 2.7e-27 127.1 293 33.4
TPR.G23667 Trifolium pratense HOM05D008089 ORTHO05D000166 6.0e-27 125.9 174 43.1
TPR.G6617 Trifolium pratense HOM05D008089 ORTHO05D000166 1.0e-26 125.2 154 42.2
Medtr2g049610 Medicago truncatula HOM05D008089 ORTHO05D000166 1.3e-26 124.8 160 45.6
Medtr4g045977 Medicago truncatula HOM05D008089 ORTHO05D000166 1.7e-26 124.4 217 35.9
TPR.G28062 Trifolium pratense HOM05D008089 ORTHO05D000166 1.7e-26 124.4 161 41.0
Lj2g0013276 Lotus japonicus HOM05D008089 ORTHO05D000166 3.0e-26 123.6 226 36.3
TPR.G32449 Trifolium pratense HOM05D000307 ORTHO05D000166 3.0e-26 123.6 217 35.5
Lalb_Chr05g0223381 Lupinus albus HOM05D000307 ORTHO05D000166 1.1e-25 121.7 265 31.7
Medtr2g049630 Medicago truncatula HOM05D008089 ORTHO05D000166 1.1e-25 121.7 216 38.9
TPR.G6633 Trifolium pratense HOM05D008089 ORTHO05D000166 1.1e-25 121.7 154 42.2
Glyma.19G047600 Glycine max HOM05D008089 ORTHO05D000166 4.3e-25 119.8 301 30.2
TPR.G26403 Trifolium pratense HOM05D008089 ORTHO05D000166 4.3e-25 119.8 219 34.2
Glyma.19G045900 Glycine max HOM05D008089 ORTHO05D000166 9.5e-25 118.6 291 30.9
Lj1g0015182 Lotus japonicus HOM05D008089 ORTHO05D000166 9.5e-25 118.6 163 44.2
TPR.G7340 Trifolium pratense HOM05D008089 ORTHO05D000166 9.5e-25 118.6 157 44.6
Ca_13731_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 1.2e-24 118.2 168 39.9
Psat1g082000 Pisum sativum HOM05D000307 ORTHO05D000166 1.2e-24 118.2 187 36.9
Lalb_Chr11g0073241 Lupinus albus HOM05D008089 ORTHO05D000166 1.6e-24 117.9 165 40.6
Medtr2g049530 Medicago truncatula HOM05D008089 ORTHO05D000166 1.6e-24 117.9 151 45.7
TPR.G23696 Trifolium pratense HOM05D008089 ORTHO05D000166 2.1e-24 117.5 155 43.2
Phvul.004G060900 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 2.8e-24 117.1 219 35.2
arahy.Tifrunner.gnm1.ann1.P24S13 Arachis hypogaea HOM05D000307 ORTHO05D000166 8.1e-24 115.5 214 35.5
TPR.G23685 Trifolium pratense HOM05D008089 ORTHO05D000166 1.1e-23 115.2 292 31.2
Ca_02546_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 1.8e-23 114.4 161 41.6
TPR.G28961 Trifolium pratense HOM05D008089 ORTHO05D000166 1.8e-23 114.4 153 41.8
Ca_02497_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 2.4e-23 114.0 161 41.0
arahy.Tifrunner.gnm1.ann1.Q9AYPR Arachis hypogaea HOM05D008089 ORTHO05D000166 3.1e-23 113.6 293 32.8
Phvul.009G213800 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 3.1e-23 113.6 244 33.2
VMungo1309G0257 Vigna mungo HOM05D008089 ORTHO05D000166 5.2e-23 112.8 249 30.9
Medtr6g018920 Medicago truncatula HOM05D000307 ORTHO05D000166 1.5e-22 111.3 172 34.3
Medtr6g005440 Medicago truncatula HOM05D008089 ORTHO05D000166 2.0e-22 110.9 280 31.8
Phvul.004G061600 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 2.6e-22 110.5 217 34.1
TPR.G1441 Trifolium pratense HOM05D000307 ORTHO05D000166 2.6e-22 110.5 186 34.4
Phvul.004G061300 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 3.4e-22 110.2 217 34.6
Lj5g0004947 Lotus japonicus HOM05D000307 ORTHO05D000166 7.6e-22 109.0 152 39.5
Lj5g0023944 Lotus japonicus HOM05D000307 ORTHO05D000166 7.6e-22 109.0 152 39.5
Lj1g0022539 Lotus japonicus HOM05D008089 ORTHO05D000166 9.9e-22 108.6 224 33.9
VMungo0251G0242 Vigna mungo HOM05D008089 ORTHO05D000166 9.9e-22 108.6 156 35.9
Phvul.002G183400 Phaseolus vulgaris HOM05D000307 ORTHO05D000166 1.3e-21 108.2 152 35.5
Phvul.004G061500 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 1.7e-21 107.8 209 35.4
Lalb_Chr23g0265491 Lupinus albus HOM05D000307 ORTHO05D000166 2.9e-21 107.1 161 38.5
TPR.G7343 Trifolium pratense HOM05D008089 ORTHO05D000166 3.8e-21 106.7 136 43.4
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 4.9e-21 106.3 160 36.9
Lj5g0018268 Lotus japonicus HOM05D000307 ORTHO05D000166 4.9e-21 106.3 259 32.4
Medtr1g115290 Medicago truncatula HOM05D008089 ORTHO05D000166 4.9e-21 106.3 123 43.9
Phvul.004G061000 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 4.9e-21 106.3 175 37.7
VMungo0647G1946 Vigna mungo HOM05D008089 ORTHO05D000166 4.9e-21 106.3 156 34.6
VMungo1080G1585 Vigna mungo HOM05D008089 ORTHO05D000166 1.1e-20 105.1 264 31.4
Phvul.004G060500 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 4.2e-20 103.2 213 34.3
Glyma.08G095300 Glycine max HOM05D008089 ORTHO05D000166 7.1e-20 102.4 158 36.1
Medtr1g114730 Medicago truncatula HOM05D000307 ORTHO05D000166 9.2e-20 102.1 173 32.9
Glyma.05G140000 Glycine max HOM05D000307 ORTHO05D000166 1.6e-19 101.3 158 35.4
Migut.N00838 Erythranthe guttata HOM05D000307 ORTHO05D000166 2.7e-19 100.5 174 37.4
MD02G1297800 Malus domestica HOM05D000307 ORTHO05D000166 1.3e-18 98.2 213 29.6
Migut.N00831 Erythranthe guttata HOM05D000307 ORTHO05D000166 3.9e-18 96.7 156 37.2
Medtr6g005450 Medicago truncatula HOM05D008089 ORTHO05D000166 5.1e-18 96.3 176 33.0
Glyma.08G095500 Glycine max HOM05D008089 ORTHO05D000166 8.7e-18 95.5 221 32.6
Phvul.005G017200 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 8.7e-18 95.5 234 29.5
Phvul.004G061100 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 1.5e-17 94.7 156 36.5
Cfa007888 Carpinus fangiana HOM05D000307 ORTHO05D000166 4.3e-17 93.2 149 34.9
Oeu064601.1 Olea europaea HOM05D000307 ORTHO05D000166 9.6e-17 92.0 170 35.3
Phvul.004G060700 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 2.1e-16 90.9 187 33.2
Thecc.01G119800 Theobroma cacao HOM05D000307 ORTHO05D000166 4.7e-16 89.7 160 33.1
Duzib147G0158 Durio zibethinus HOM05D000307 ORTHO05D000166 8.1e-16 89.0 160 33.8
QL09p041547 Quercus lobata HOM05D000307 ORTHO05D000166 8.1e-16 89.0 189 31.7
Oeu023403.1 Olea europaea HOM05D000307 ORTHO05D000166 1.1e-15 88.6 165 33.3
Atru.chr4.565 Acer truncatum HOM05D000307 ORTHO05D000166 2.4e-15 87.4 165 32.7
Gohir.D03G048600 Gossypium hirsutum HOM05D000307 ORTHO05D000166 6.9e-15 85.9 160 33.1
Migut.B00770 Erythranthe guttata HOM05D000307 ORTHO05D000166 9.0e-15 85.5 225 28.4
Potri.001G214900 Populus trichocarpa HOM05D000307 ORTHO05D000166 9.0e-15 85.5 218 28.9
Gorai.003G049800 Gossypium raimondii HOM05D000307 ORTHO05D000166 1.2e-14 85.1 160 33.1
SalBow7G2221 Salvia bowleyana HOM05D000307 ORTHO05D000166 1.5e-14 84.7 156 34.0
SGA_v2.0_scaffold304G47921 Striga asiatica HOM05D000307 ORTHO05D000166 2.0e-14 84.3 117 40.2
Oeu061769.1 Olea europaea HOM05D000307 ORTHO05D000166 3.4e-14 83.6 249 26.9
Migut.N01290 Erythranthe guttata HOM05D000307 ORTHO05D000166 4.4e-14 83.2 164 33.5
TWI34G1561 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 5.8e-14 82.8 167 30.5
Glyma.09G088201 Glycine max HOM05D008089 ORTHO05D000166 7.6e-14 82.4 133 39.8
Nitab4.5_0000787g0180 Nicotiana tabacum HOM05D000307 ORTHO05D000166 7.6e-14 82.4 188 30.3
Oeu061767.1 Olea europaea HOM05D000307 ORTHO05D000166 9.9e-14 82.0 247 26.7
Cc02_g23180 Coffea canephora HOM05D000307 ORTHO05D000166 1.3e-13 81.6 154 31.2
ECA246G0964 Erigeron canadensis HOM05D000307 ORTHO05D000166 1.3e-13 81.6 157 30.6
HanXRQChr10g0294541 Helianthus annuus HOM05D000307 ORTHO05D000166 1.3e-13 81.6 193 30.1
Potri.012G109900 Populus trichocarpa HOM05D000307 ORTHO05D000166 1.3e-13 81.6 162 29.0
TWI38G1011 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 1.3e-13 81.6 186 32.8
ECA234G3622 Erigeron canadensis HOM05D000307 ORTHO05D000166 1.7e-13 81.3 157 29.3
Oeu046900.1 Olea europaea HOM05D000307 ORTHO05D000166 1.7e-13 81.3 222 28.4
Potri.002G255700 Populus trichocarpa HOM05D000307 ORTHO05D000166 2.2e-13 80.9 162 29.0
TAR624G0600 Trochodendron aralioides HOM05D000307 ORTHO05D000166 3.8e-13 80.1 152 34.2
Atru.chr8.2490 Acer truncatum HOM05D000307 ORTHO05D000166 4.9e-13 79.7 225 28.4
Peaxi162Scf00129g00103 Petunia axillaris HOM05D000307 ORTHO05D000166 4.9e-13 79.7 167 31.1
Peaxi162Scf00683g00114 Petunia axillaris HOM05D000307 ORTHO05D000166 6.4e-13 79.3 237 27.0
Lsat_1_v5_gn_5_103840 Lactuca sativa HOM05D000307 ORTHO05D000166 1.4e-12 78.2 186 28.5
CiPaw.04G087000 Carya illinoinensis HOM05D000307 ORTHO05D000166 1.9e-12 77.8 174 32.8
Nn5g28739 Nelumbo nucifera HOM05D000307 ORTHO05D000166 2.4e-12 77.4 149 32.2
Sed0006669 Sechium edule HOM05D000307 ORTHO05D000166 4.2e-12 76.6 195 27.7
Prupe.3G306000 Prunus persica HOM05D000307 ORTHO05D000166 5.4e-12 76.3 161 33.5
Dinv29104 Davidia involucrata HOM05D000307 ORTHO05D000166 1.6e-11 74.7 191 27.7
Oeu046899.1 Olea europaea HOM05D000307 ORTHO05D000166 1.6e-11 74.7 232 28.4
Potri.001G329800 Populus trichocarpa HOM05D056674 ORTHO05D000166 1.6e-11 74.7 161 29.8
CiPaw.04G086700 Carya illinoinensis HOM05D000307 ORTHO05D000166 2.7e-11 73.9 205 29.8
PGSC0003DMG400024916 Solanum tuberosum HOM05D000307 ORTHO05D000166 4.6e-11 73.2 175 29.7
CsaV3_2G019470 Cucumis sativus L. HOM05D000307 ORTHO05D000166 6.0e-11 72.8 192 28.6
Ca_31023_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 1.0e-10 72.0 92 37.0
CSS0047056 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.3e-10 71.6 158 29.1
CAN.G855.4 Capsicum annuum HOM05D000307 ORTHO05D000166 1.7e-10 71.2 167 28.1
COL.COLO4_31651 Corchorus olitorius HOM05D028763 ORTHO05D000166 1.7e-10 71.2 159 28.9
HanXRQChr15g0464231 Helianthus annuus HOM05D000307 ORTHO05D000166 1.7e-10 71.2 186 28.5
Prupe.7G032000 Prunus persica HOM05D000307 ORTHO05D000166 3.0e-10 70.5 202 26.2
CSS0029498 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.9e-10 70.1 182 28.0
Manes.15G161100 Manihot esculenta HOM05D028904 ORTHO05D000166 5.1e-10 69.7 263 25.1
SGA_v2.0_scaffold30G12416 Striga asiatica HOM05D000307 ORTHO05D000166 5.1e-10 69.7 177 29.4
Nitab4.5_0009637g0010 Nicotiana tabacum HOM05D000307 ORTHO05D000166 6.6e-10 69.3 158 30.4
Prupe.7G030800 Prunus persica HOM05D000307 ORTHO05D000166 6.6e-10 69.3 168 26.8
TAR381G0994 Trochodendron aralioides HOM05D000307 ORTHO05D000166 6.6e-10 69.3 178 29.8
Ciclev10012506m.g Citrus clementina HOM05D000307 ORTHO05D000166 1.5e-09 68.2 159 28.9
Solyc01g103550.1 Solanum lycopersicum HOM05D000307 ORTHO05D000166 1.5e-09 68.2 175 28.6
Aa31LG1G18920 Aethionema arabicum HOM05D000307 ORTHO05D000166 1.9e-09 67.8 217 30.0
AT5G55690 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 1.9e-09 67.8 154 31.2
MELO3C023227.2 Cucumis melo HOM05D000307 ORTHO05D000166 2.5e-09 67.4 164 30.5
Peaxi162Scf00332g10015 Petunia axillaris HOM05D000307 ORTHO05D000166 2.5e-09 67.4 192 29.2
ECA247G1835 Erigeron canadensis HOM05D000307 ORTHO05D000166 5.6e-09 66.2 227 26.4
Phvul.004G060600 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 5.6e-09 66.2 136 33.1
Sopen01g045900 Solanum pennellii HOM05D000307 ORTHO05D000166 5.6e-09 66.2 174 28.7
RhsimUnG0101700 Rhododendron simsii HOM05D000307 ORTHO05D000166 7.3e-09 65.9 167 27.5
AL8G31270 Arabidopsis lyrata HOM05D000307 ORTHO05D000166 1.3e-08 65.1 152 30.9
arahy.Tifrunner.gnm1.ann1.PV8IVT Arachis hypogaea HOM05D008089 ORTHO05D000166 1.3e-08 65.1 99 40.4
RcHm_v2.0_Chr2g0175531 Rosa chinensis HOM05D000307 ORTHO05D000166 1.3e-08 65.1 145 31.0
EL10Ac4g07609 Beta vulgaris HOM05D022259 ORTHO05D000166 2.1e-08 64.3 191 28.8
MBI09_g18620_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.8e-08 63.9 213 25.8
CARHR272830 Cardamine hirsuta HOM05D000307 ORTHO05D000166 3.6e-08 63.5 148 31.8
FAN09G4481 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.8e-08 63.2 154 29.2
FvH4_6g53490 Fragaria vesca HOM05D000307 ORTHO05D000166 6.2e-08 62.8 154 29.2
TPR.G30022 Trifolium pratense HOM05D008089 ORTHO05D026066 6.2e-08 62.8 174 30.5
Carub.0008s1606 Capsella rubella HOM05D000307 ORTHO05D000166 8.1e-08 62.4 152 30.3
Solyc11g020620.1 Solanum lycopersicum HOM05D000307 ORTHO05D000166 8.1e-08 62.4 158 26.6
FAN05G4713 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.1e-07 62.0 232 27.2
Solyc11g020320.1 Solanum lycopersicum HOM05D000307 ORTHO05D000166 1.1e-07 62.0 176 27.3
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.4e-07 61.6 168 27.4
Phvul.004G061400 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 1.4e-07 61.6 144 29.9
Ah.01g022850 Amaranthus hybridus HOM05D000307 ORTHO05D000166 1.8e-07 61.2 232 24.6
Ciclev10009227m.g Citrus clementina HOM05D000307 ORTHO05D000166 2.4e-07 60.8 159 28.3
FAN02G3985 Fragaria x ananassa HOM05D000307 ORTHO05D000166 2.4e-07 60.8 270 24.8
Ah.01g023290 Amaranthus hybridus HOM05D020092 ORTHO05D000166 4.0e-07 60.1 179 26.8
Sopen11g021030 Solanum pennellii HOM05D000307 ORTHO05D000166 4.0e-07 60.1 159 25.8
Sp6g17600 Schrenkiella parvula HOM05D000307 ORTHO05D000166 5.3e-07 59.7 142 30.3
Ca_04374_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 6.9e-07 59.3 92 41.3
BcaB01g04354 Brassica carinata HOM05D000307 ORTHO05D000166 9.0e-07 58.9 154 31.8
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 9.0e-07 58.9 270 24.8
RcHm_v2.0_Chr5g0016461 Rosa chinensis HOM05D000307 ORTHO05D000166 9.0e-07 58.9 145 29.7
AT5G58890 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 2.6e-06 57.4 163 27.6
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.6e-06 57.4 191 28.3
CARHR269010 Cardamine hirsuta HOM05D000307 ORTHO05D000166 2.6e-06 57.4 248 25.4
Nn3g20912 Nelumbo nucifera HOM05D016285 ORTHO05D000166 2.6e-06 57.4 167 31.7
A03p13870 Brassica napus HOM05D000307 ORTHO05D000166 3.4e-06 57.0 154 30.5
BraA03t10690Z Brassica rapa HOM05D000307 ORTHO05D000166 3.4e-06 57.0 154 30.5
BolC3t14055H Brassica oleracea HOM05D000307 ORTHO05D000166 5.8e-06 56.2 154 30.5
Sc17g0005430 Simmondsia chinensis HOM05D000307 ORTHO05D000166 5.8e-06 56.2 160 29.4
BcaC01g06387 Brassica carinata HOM05D000307 ORTHO05D000166 9.9e-06 55.5 154 30.5
C03p16320 Brassica napus HOM05D000307 ORTHO05D000166 9.9e-06 55.5 154 30.5
Thhalv10015661m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 9.9e-06 55.5 194 27.8


User provided reference genes

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