Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 4.1e-80 301.6 184 100.0
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 9.0e-27 124.4 119 54.6
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 2.6e-26 122.9 112 58.9
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 4.5e-26 122.1 100 57.0
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.3e-25 120.6 112 56.2
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 1.7e-25 120.2 95 62.1
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 7.2e-24 114.8 218 50.9
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 2.1e-23 113.2 194 53.1
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 4.6e-23 112.1 89 64.0
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.8e-22 110.2 89 64.0
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 3.9e-22 109.0 100 59.0
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.9e-22 109.0 100 59.0
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 1.5e-21 107.1 86 62.8
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.3e-21 105.9 110 54.5
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 7.4e-21 104.8 108 53.7
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 9.7e-21 104.4 84 64.3
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.2e-20 103.2 86 64.0
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 2.8e-20 102.8 121 48.8
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.4e-19 100.5 115 49.6
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 3.1e-19 99.4 103 52.4
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 4.1e-19 99.0 93 53.8
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 1.2e-18 97.4 93 53.8
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.0e-18 96.7 118 48.3
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.0e-18 96.7 112 48.2
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 4.5e-18 95.5 107 48.6
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.9e-18 95.1 100 53.0
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 7.7e-18 94.7 85 55.3
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.9e-17 92.8 97 53.6
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 5.0e-17 92.0 106 51.9
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 1.1e-16 90.9 83 55.4
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.5e-16 89.7 117 47.0
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.5e-16 89.7 105 47.6
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 3.2e-16 89.4 74 62.2
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 3.2e-16 89.4 74 62.2
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 3.2e-16 89.4 108 50.9
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 7.2e-16 88.2 111 49.5
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 7.2e-16 88.2 96 46.9
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 9.4e-16 87.8 87 52.9
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 9.4e-16 87.8 121 43.0
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 9.4e-16 87.8 111 46.8
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.2e-15 87.4 105 51.4
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 1.6e-15 87.0 100 46.0
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 6.1e-15 85.1 93 47.3
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 7.9e-15 84.7 103 45.6
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 7.9e-15 84.7 93 51.6
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 7.9e-15 84.7 110 45.5
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.0e-14 84.3 90 52.2
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 1.0e-14 84.3 172 50.0
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.4e-14 84.0 84 54.8
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 1.8e-14 83.6 104 43.3
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 3.0e-14 82.8 74 52.7
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.9e-14 82.4 91 50.5
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 3.9e-14 82.4 91 50.5
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 5.1e-14 82.0 84 54.8
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 5.1e-14 82.0 81 53.1
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 6.7e-14 81.6 113 41.6
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.5e-13 80.5 86 47.7
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.5e-13 80.5 86 47.7
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.5e-13 80.5 86 47.7
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.5e-13 80.5 110 43.6
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.5e-13 80.5 110 43.6
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.0e-13 80.1 86 47.7
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 2.0e-13 80.1 80 52.5
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 4.4e-13 79.0 73 54.8
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 5.7e-13 78.6 197 45.2
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 5.7e-13 78.6 182 48.4
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 7.4e-13 78.2 81 51.9
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 7.4e-13 78.2 86 47.7
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 7.4e-13 78.2 85 42.4
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 9.7e-13 77.8 77 48.1
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 9.7e-13 77.8 88 50.0
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.3e-12 77.4 113 42.5
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.3e-12 77.4 88 46.6
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.7e-12 77.0 58 60.3
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 2.2e-12 76.6 86 50.0
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 2.2e-12 76.6 101 44.6
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 2.8e-12 76.3 77 51.9
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 2.8e-12 76.3 111 42.3
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 2.8e-12 76.3 85 48.2
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 3.7e-12 75.9 59 62.7
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 4.8e-12 75.5 84 46.4
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 6.3e-12 75.1 86 44.2
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 6.3e-12 75.1 57 63.2
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 6.3e-12 75.1 95 48.4
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 8.2e-12 74.7 77 53.2
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 1.1e-11 74.3 83 47.0
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 1.1e-11 74.3 87 44.8
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.4e-11 73.9 75 52.0
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 1.4e-11 73.9 188 43.6
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.8e-11 73.6 75 52.0
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.8e-11 73.6 94 40.4
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.8e-11 73.6 76 47.4
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 1.8e-11 73.6 94 46.8
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 2.4e-11 73.2 74 48.6
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 3.1e-11 72.8 95 41.1
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 5.3e-11 72.0 73 49.3
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.3e-11 72.0 96 46.9
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 3.5e-10 69.3 84 44.0
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 3.5e-10 69.3 87 39.1
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.5e-10 69.3 55 61.8
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 4.5e-10 68.9 77 49.4
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 7.7e-10 68.2 93 43.0
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 7.7e-10 68.2 54 53.7
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.0e-09 67.8 75 46.7
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.0e-09 67.8 90 44.4
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.3e-09 67.4 103 40.8
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.3e-09 67.4 49 65.3
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.3e-09 67.4 86 45.3
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 1.7e-09 67.0 111 40.5
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 1.7e-09 67.0 59 54.2
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.2e-09 66.6 51 56.9
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 2.9e-09 66.2 75 45.3
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 5.0e-09 65.5 74 45.9
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 5.0e-09 65.5 86 45.3
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 6.5e-09 65.1 87 46.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.1e-08 64.3 100 42.0
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 1.5e-08 63.9 53 58.5
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 2.5e-08 63.2 49 61.2
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 2.5e-08 63.2 49 61.2
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 3.2e-08 62.8 75 44.0
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 5.5e-08 62.0 97 39.2
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 5.5e-08 62.0 92 39.1
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 5.5e-08 62.0 92 38.0
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 5.5e-08 62.0 102 37.3
Os08g0108300 Oryza sativa ssp. japonica HOM05D053309 ORTHO05D003655 5.5e-08 62.0 73 43.8
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 7.2e-08 61.6 64 46.9
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 9.4e-08 61.2 95 37.9
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 1.6e-07 60.5 73 46.6
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 1.6e-07 60.5 68 50.0
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.6e-07 60.5 87 37.9
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 2.1e-07 60.1 80 42.5
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 2.1e-07 60.1 79 43.0
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 2.1e-07 60.1 76 43.4
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 2.7e-07 59.7 92 34.8
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.6e-07 59.3 198 41.4
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 3.6e-07 59.3 99 36.4
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 4.7e-07 58.9 84 42.9
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 4.7e-07 58.9 76 43.4
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 8.0e-07 58.2 58 50.0
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 8.0e-07 58.2 85 40.0
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.0e-06 57.8 100 40.0
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 1.4e-06 57.4 79 41.8
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 1.8e-06 57.0 81 39.5
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.8e-06 57.0 84 39.3
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.8e-06 57.0 47 55.3
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 2.3e-06 56.6 90 37.8
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.3e-06 56.6 88 35.2
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.0e-06 56.2 83 39.8
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 4.0e-06 55.8 78 39.7
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 4.0e-06 55.8 45 55.6
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 5.2e-06 55.5 68 51.5
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 5.2e-06 55.5 83 37.3
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.7e-06 55.1 83 38.6
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 6.7e-06 55.1 79 41.8


User provided reference genes

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