Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 0.0e+00 2103.9 1091 100.0
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 0.0e+00 2023.8 1097 96.0
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.4e-196 691.0 1155 42.8
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 2.9e-189 666.8 1149 41.5
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 4.1e-183 646.4 1177 40.4
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 2.0e-182 644.0 1188 41.0
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 2.1e-171 607.4 1199 39.8
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 2.1e-171 607.4 1199 39.8
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.2e-166 591.7 1186 39.3
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 7.0e-159 565.8 1212 38.7
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 1.8e-151 541.2 1212 36.5
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 6.8e-146 522.7 1245 36.5
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 4.4e-145 520.0 1254 34.8
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 3.6e-115 420.6 1387 31.5
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.3e-93 349.0 1246 30.7
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 1.1e-87 329.3 1224 29.9
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 3.5e-86 324.3 1074 30.6
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 2.5e-79 301.6 1034 31.1
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.0e-77 296.2 987 30.9
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.3e-75 289.3 1016 30.5
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 3.7e-75 287.7 1020 30.0
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.4e-74 285.0 1013 29.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 8.4e-72 276.6 1050 29.9
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 8.4e-72 276.6 1019 29.1
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.5e-71 275.0 1020 29.1
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.2e-70 272.7 977 29.2
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 6.1e-70 270.4 984 29.0
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 5.7e-68 263.8 1074 28.1
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.2e-62 246.1 1047 28.9
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.1e-58 233.0 1012 28.6
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.1e-58 231.5 1010 29.0
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.4e-57 228.0 1023 28.5
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 3.8e-56 224.6 1205 27.4
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.4e-55 222.6 1029 27.1
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.9e-55 222.2 961 28.0
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 4.7e-54 217.6 1004 27.8
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 6.1e-54 217.2 986 28.1
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 6.1e-54 217.2 1039 27.7
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 6.1e-54 217.2 1042 27.2
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.4e-53 216.1 999 27.6
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 6.7e-53 213.8 1009 28.2
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.8e-51 207.6 1038 26.7
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 1.5e-49 202.6 1006 28.1
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 4.7e-46 191.0 701 28.7
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 4.7e-46 191.0 1005 28.6
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 1.4e-45 189.5 1127 26.2
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 3.0e-45 188.3 1163 26.6
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 7.4e-44 183.7 1030 25.6
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.7e-43 182.6 1000 27.2
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 2.8e-43 181.8 998 26.5
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.4e-42 179.5 1046 26.6
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.5e-41 174.9 1077 24.5
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 7.7e-41 173.7 598 29.4
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.0e-40 173.3 983 27.6
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.9e-40 171.8 973 27.9
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.4e-37 162.9 1009 25.5
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 2.3e-37 162.2 1156 24.7
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 3.4e-36 158.3 1148 24.9
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 3.1e-34 151.8 995 24.2
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.7e-33 148.7 292 35.6
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 7.7e-33 147.1 1036 25.6
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.7e-32 146.0 961 25.7
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 2.9e-32 145.2 597 26.5
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.5e-32 144.1 367 33.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 8.5e-32 143.7 964 25.9
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 5.5e-31 141.0 312 34.3
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.5e-28 132.9 1021 25.2
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 5.7e-28 131.0 1021 25.1
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 2.8e-27 128.6 937 25.2
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.8e-27 128.6 1022 23.1
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 6.3e-27 127.5 1036 25.1
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 5.4e-26 124.4 1015 25.0
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 5.4e-26 124.4 1034 25.6
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 7.0e-26 124.0 1043 24.3
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.7e-25 122.1 996 25.5
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 2.3e-24 119.0 1041 22.3
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-22 113.2 309 30.7
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.6e-22 112.8 971 23.3
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 3.0e-21 108.6 717 24.7
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 8.9e-21 107.1 837 24.4
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 8.9e-21 107.1 1034 22.8
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 2.0e-20 105.9 1020 23.8
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 9.8e-20 103.6 552 25.0
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 1.7e-19 102.8 371 28.6
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 6.3e-19 100.9 743 23.8
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.8e-18 99.4 445 27.0
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.6e-17 96.3 386 28.0
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.3e-16 93.2 330 28.8
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.3e-16 92.4 195 35.4
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 5.0e-16 91.3 507 24.1
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.5e-15 89.7 601 23.8
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 7.3e-15 87.4 195 34.4
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 7.3e-15 87.4 449 26.1
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 9.5e-15 87.0 477 25.6
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.6e-14 86.3 454 25.1
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.6e-14 86.3 346 27.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.0e-13 83.6 266 27.4
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.1e-13 82.0 541 23.7
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 3.1e-13 82.0 243 30.5
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.0e-13 81.6 123 39.8
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.5e-12 79.7 345 23.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 2.6e-12 79.0 1005 21.2
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 2.6e-12 79.0 362 25.1
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.4e-12 78.6 283 27.2
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 2.2e-11 75.9 203 29.6
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 3.7e-11 75.1 269 27.9
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 4.9e-11 74.7 443 23.0
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 8.3e-11 73.9 543 25.0
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 1.1e-10 73.6 452 23.2
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 1.4e-10 73.2 233 30.0
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.9e-10 72.8 199 31.7
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.9e-10 72.8 199 31.7
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 2.4e-10 72.4 637 22.8
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 3.2e-10 72.0 281 28.1
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 3.2e-10 72.0 365 25.5
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 5.4e-10 71.2 199 31.2
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 5.4e-10 71.2 199 31.2
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 1.2e-09 70.1 200 28.5
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.6e-09 69.7 246 26.8
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.0e-09 69.3 199 31.2
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 2.0e-09 69.3 200 28.5
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 3.5e-09 68.6 200 28.0
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 6.0e-09 67.8 205 27.8
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 6.0e-09 67.8 271 27.7
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 7.8e-09 67.4 260 28.1
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 7.8e-09 67.4 260 28.1
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 7.8e-09 67.4 260 28.1
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.3e-08 66.6 614 23.6
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 3.9e-08 65.1 458 22.7
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 6.6e-08 64.3 308 24.7
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 9.5e-07 60.5 313 24.0
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 9.5e-07 60.5 313 24.0
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 9.5e-07 60.5 523 23.9
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 3.6e-06 58.5 81 39.5


User provided reference genes

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