Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 2.8e-183 645.6 446 100.0
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 6.8e-28 129.4 137 54.7
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 1.6e-21 108.2 86 73.3
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 1.6e-21 108.2 86 73.3
TPR.G18613 Trifolium pratense HOM05D007409 ORTHO05D009264 1.2e-19 102.1 61 73.8
Psat6g097560 Pisum sativum HOM05D007409 ORTHO05D009264 1.5e-19 101.7 61 73.8
Medtr1g035250 Medicago truncatula HOM05D007409 ORTHO05D009264 5.8e-19 99.8 61 70.5
ClCG04G012770 Citrullus lanatus HOM05D003579 ORTHO05D004266 9.9e-19 99.0 86 66.3
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 6.4e-18 96.3 86 64.0
VMungo1215G2624 Vigna mungo HOM05D007409 ORTHO05D009264 8.4e-18 95.9 61 68.9
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 1.1e-17 95.5 86 66.3
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 1.1e-17 95.5 86 66.3
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 1.4e-17 95.1 156 42.3
Glyma.07G160400 Glycine max HOM05D007409 ORTHO05D009264 1.9e-17 94.7 60 73.3
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.4e-17 94.4 86 66.3
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 2.4e-17 94.4 86 64.0
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 2.4e-17 94.4 86 64.0
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 4.1e-17 93.6 86 65.1
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 5.4e-17 93.2 86 64.0
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 5.4e-17 93.2 86 65.1
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 5.4e-17 93.2 86 65.1
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 5.4e-17 93.2 86 64.0
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 5.4e-17 93.2 156 41.7
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 7.1e-17 92.8 87 63.2
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 7.1e-17 92.8 86 64.0
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 7.1e-17 92.8 86 64.0
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 7.1e-17 92.8 86 64.0
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 7.1e-17 92.8 156 42.9
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 1.2e-16 92.0 86 64.0
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 1.2e-16 92.0 86 62.8
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.2e-16 92.0 87 63.2
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.6e-16 91.7 86 62.8
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.6e-16 91.7 87 62.1
Lj3g0009247 Lotus japonicus HOM05D007409 ORTHO05D009264 1.6e-16 91.7 60 70.0
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 1.6e-16 91.7 86 64.0
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.1e-16 91.3 86 64.0
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.1e-16 91.3 87 62.1
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 2.1e-16 91.3 87 62.1
Phvul.003G009700 Phaseolus vulgaris HOM05D007409 ORTHO05D009264 2.1e-16 91.3 60 65.0
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 2.1e-16 91.3 156 41.0
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 2.7e-16 90.9 87 62.1
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 3.5e-16 90.5 161 41.6
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 3.5e-16 90.5 86 64.0
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 3.5e-16 90.5 86 61.6
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 3.5e-16 90.5 86 61.6
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 3.5e-16 90.5 87 63.2
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 3.5e-16 90.5 86 60.5
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.6e-16 90.1 86 62.8
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 4.6e-16 90.1 86 62.8
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 4.6e-16 90.1 86 61.6
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 6.0e-16 89.7 86 61.6
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 6.0e-16 89.7 156 39.7
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 7.8e-16 89.4 87 62.1
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 7.8e-16 89.4 87 60.9
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 7.8e-16 89.4 87 59.8
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 7.8e-16 89.4 86 61.6
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 7.8e-16 89.4 86 61.6
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 7.8e-16 89.4 86 62.8
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 1.0e-15 89.0 87 60.9
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 1.0e-15 89.0 86 60.5
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 1.0e-15 89.0 87 59.8
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.0e-15 89.0 87 60.9
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 1.0e-15 89.0 86 61.6
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 1.0e-15 89.0 159 41.5
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 1.0e-15 89.0 88 60.2
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 1.0e-15 89.0 87 59.8
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.3e-15 88.6 86 61.6
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 1.3e-15 88.6 86 61.6
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 1.3e-15 88.6 86 61.6
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 1.3e-15 88.6 86 60.5
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 1.3e-15 88.6 87 59.8
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 2.3e-15 87.8 86 61.6
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 2.3e-15 87.8 87 59.8
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 2.3e-15 87.8 86 60.5
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 3.0e-15 87.4 86 64.0
BcaB04g17424 Brassica carinata HOM05D003579 ORTHO05D004266 3.0e-15 87.4 88 58.0
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 3.0e-15 87.4 86 60.5
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 3.0e-15 87.4 86 60.5
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 3.0e-15 87.4 86 60.5
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 3.0e-15 87.4 86 60.5
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 3.0e-15 87.4 86 60.5
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 3.0e-15 87.4 86 60.5
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 3.0e-15 87.4 86 60.5
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 3.9e-15 87.0 86 60.5
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 3.9e-15 87.0 86 60.5
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 3.9e-15 87.0 159 39.6
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 6.6e-15 86.3 86 58.1
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 8.6e-15 85.9 87 56.3
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 8.6e-15 85.9 105 55.2
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 1.1e-14 85.5 86 60.5
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 1.1e-14 85.5 86 60.5
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 1.1e-14 85.5 86 60.5
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 1.1e-14 85.5 87 56.3
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.1e-14 85.5 87 58.6
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 1.5e-14 85.1 86 58.1
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 1.5e-14 85.1 86 60.5
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.5e-14 85.1 86 60.5
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 1.5e-14 85.1 86 55.8
Lsat_1_v5_gn_7_12281 Lactuca sativa HOM05D003579 ORTHO05D004266 1.5e-14 85.1 86 57.0
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.5e-14 85.1 86 60.5
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 1.9e-14 84.7 86 59.3
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.9e-14 84.7 86 59.3
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.9e-14 84.7 86 59.3
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 1.9e-14 84.7 148 39.9
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.9e-14 84.7 86 61.6
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 1.9e-14 84.7 156 39.1
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 2.5e-14 84.3 87 57.5
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 3.3e-14 84.0 86 58.1
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.3e-14 84.0 87 57.5
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 4.3e-14 83.6 86 58.1
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 4.3e-14 83.6 124 46.8
QL06p012977 Quercus lobata HOM05D007409 ORTHO05D009264 4.3e-14 83.6 60 58.3
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 5.6e-14 83.2 86 60.5
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 5.6e-14 83.2 156 38.5
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 7.3e-14 82.8 86 58.1
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 7.3e-14 82.8 156 38.5
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 7.3e-14 82.8 156 38.5
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 9.6e-14 82.4 87 55.2
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 9.6e-14 82.4 86 55.8
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 1.2e-13 82.0 86 54.7
Atru.chr4.3064 Acer truncatum HOM05D007409 ORTHO05D009264 2.1e-13 81.3 55 61.8
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 2.1e-13 81.3 156 37.8
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.1e-13 81.3 156 37.8
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 2.1e-13 81.3 87 56.3
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.8e-13 80.9 86 54.7
Glyma.20G007500 Glycine max HOM05D007409 ORTHO05D009264 2.8e-13 80.9 53 71.7
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.6e-13 80.5 86 57.0
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.6e-13 80.5 86 57.0
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 4.7e-13 80.1 85 56.5
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 6.2e-13 79.7 86 54.7
Haze_01348 Corylus avellana HOM05D007409 ORTHO05D009264 6.2e-13 79.7 57 57.9
Lsat_1_v5_gn_1_111321 Lactuca sativa HOM05D003579 ORTHO05D004266 1.4e-12 78.6 98 49.0
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 2.4e-12 77.8 57 54.4
Cfa015278 Carpinus fangiana HOM05D007409 ORTHO05D009264 3.1e-12 77.4 57 57.9
Duzib052G0390 Durio zibethinus HOM05D007409 ORTHO05D009264 3.1e-12 77.4 57 59.6
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 4.0e-12 77.0 86 55.8
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 6.8e-12 76.3 86 54.7
BolC5t33210H Brassica oleracea HOM05D003579 ORTHO05D004266 6.8e-12 76.3 86 54.7
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 6.8e-12 76.3 86 54.7
MD13G1149200 Malus domestica HOM05D007409 ORTHO05D009264 6.8e-12 76.3 61 49.2
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 6.8e-12 76.3 87 54.0
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 8.9e-12 75.9 59 50.8
Manes.11G109300 Manihot esculenta HOM05D007409 ORTHO05D009264 1.5e-11 75.1 77 48.1
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 2.0e-11 74.7 87 51.7
Gohir.D01G023574 Gossypium hirsutum HOM05D007409 ORTHO05D009264 2.6e-11 74.3 57 50.9
Gorai.002G031400 Gossypium raimondii HOM05D007409 ORTHO05D009264 2.6e-11 74.3 57 50.9
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 2.6e-11 74.3 87 51.7
Thecc.04G305700 Theobroma cacao HOM05D007409 ORTHO05D009264 3.4e-11 73.9 57 56.1
RcHm_v2.0_Chr4g0425991 Rosa chinensis HOM05D007409 ORTHO05D009264 4.4e-11 73.6 60 53.3
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 5.8e-11 73.2 96 47.9
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 7.6e-11 72.8 97 46.4
PGR031G2326 Punica granatum HOM05D007409 ORTHO05D009264 9.9e-11 72.4 55 50.9
SHI00109 Sapria himalayana HOM05D007409 ORTHO05D009264 9.9e-11 72.4 55 54.5
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 1.3e-10 72.0 100 46.0
FvH4_4g20630 Fragaria vesca HOM05D007409 ORTHO05D009264 1.3e-10 72.0 60 51.7
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 1.3e-10 72.0 87 52.9
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 1.7e-10 71.6 86 53.5
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 1.7e-10 71.6 87 51.7
Sed0014802 Sechium edule HOM05D007409 ORTHO05D009264 1.7e-10 71.6 60 50.0
ClCG06G004440 Citrullus lanatus HOM05D007409 ORTHO05D009264 2.2e-10 71.2 60 48.3
Gohir.A01G035500 Gossypium hirsutum HOM05D007409 ORTHO05D009264 2.2e-10 71.2 55 50.9
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 4.9e-10 70.1 44 77.3
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 6.4e-10 69.7 96 47.9
Ciclev10004501m.g Citrus clementina HOM05D007409 ORTHO05D009264 8.4e-10 69.3 55 56.4
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 8.4e-10 69.3 87 50.6
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 8.4e-10 69.3 44 79.5
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 1.4e-09 68.6 44 79.5
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 1.4e-09 68.6 87 49.4
CANSAT78G0164 Cannabis sativa HOM05D007409 ORTHO05D009264 1.9e-09 68.2 59 47.5
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 1.9e-09 68.2 58 63.8
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 2.4e-09 67.8 70 54.3
MELO3C021257.2 Cucumis melo HOM05D007409 ORTHO05D009264 3.2e-09 67.4 60 48.3
Prupe.1G113200 Prunus persica HOM05D007409 ORTHO05D009264 1.2e-08 65.5 61 47.5
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 1.6e-08 65.1 49 53.1
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 2.1e-08 64.7 55 58.2
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 2.7e-08 64.3 40 82.5
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 4.6e-08 63.5 57 59.6
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 6.0e-08 63.2 58 58.6
CsaV3_6G028460 Cucumis sativus L. HOM05D007409 ORTHO05D009264 5.1e-07 60.1 54 44.4
CsaV3_UNG230130 Cucumis sativus L. HOM05D007409 ORTHO05D009264 5.1e-07 60.1 54 44.4
Lsat_1_v5_gn_4_76120 Lactuca sativa HOM05D002699 ORTHO05D002931 1.9e-06 58.2 36 80.6
Lsat_1_v5_gn_6_63160 Lactuca sativa HOM05D002699 ORTHO05D002931 1.9e-06 58.2 38 76.3
Eucgr.B03979 Eucalyptus grandis HOM05D007409 ORTHO05D009264 5.6e-06 56.6 60 40.0
Glyma.18G156700 Glycine max HOM05D003579 ORTHO05D025634 5.6e-06 56.6 38 76.3
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 9.6e-06 55.8 87 42.5


User provided reference genes

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