Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U7ZK73 Arachis hypogaea HOM05D005700 ORTHO05D007035 1.2e-166 589.7 297 100.0
Phvul.007G244000 Phaseolus vulgaris HOM05D005700 ORTHO05D007035 2.2e-75 286.6 313 55.6
Lalb_Chr01g0010291 Lupinus albus HOM05D005700 ORTHO05D007035 6.3e-70 268.5 313 53.4
Lj1g0010858 Lotus japonicus HOM05D005700 ORTHO05D007035 1.2e-68 264.2 289 54.3
SGA_v2.0_scaffold41G15744 Striga asiatica HOM05D005700 ORTHO05D007035 5.9e-68 261.9 292 53.8
Rhsim09G0145300 Rhododendron simsii HOM05D005700 ORTHO05D007035 7.7e-68 261.5 305 53.1
Ca_26010_v3 Cicer arietinum L. HOM05D005700 ORTHO05D007035 1.3e-67 260.8 290 54.1
Medtr1g050530 Medicago truncatula HOM05D005700 ORTHO05D007035 1.7e-67 260.4 293 53.9
Nitab4.5_0000096g0200 Nicotiana tabacum HOM05D005700 ORTHO05D007035 2.7e-65 253.1 303 53.1
Hund06763 Selenicereus undatus HOM05D005700 ORTHO05D007035 3.6e-65 252.7 332 48.8
Cfa001774 Carpinus fangiana HOM05D005700 ORTHO05D007035 4.6e-65 252.3 329 49.5
Psat6g095240 Pisum sativum HOM05D005700 ORTHO05D007035 1.4e-64 250.8 283 53.7
CiPaw.01G265100 Carya illinoinensis HOM05D005700 ORTHO05D007035 5.1e-64 248.8 286 52.8
Gohir.D04G021400 Gossypium hirsutum HOM05D005700 ORTHO05D007035 9.7e-63 244.6 317 50.2
QL08p053081 Quercus lobata HOM05D005700 ORTHO05D007035 1.3e-62 244.2 280 52.1
Gohir.A05G393500 Gossypium hirsutum HOM05D005700 ORTHO05D007035 2.2e-62 243.4 317 49.5
Haze_16777 Corylus avellana HOM05D005700 ORTHO05D007035 4.8e-62 242.3 349 47.0
Hma1.2p1_0454F.1_g156230 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 4.8e-62 242.3 286 51.4
CSS0024490 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 6.3e-62 241.9 286 51.4
CiPaw.02G170000 Carya illinoinensis HOM05D005700 ORTHO05D007035 8.2e-62 241.5 283 51.6
Actinidia38892 Actinidia chinensis HOM05D005700 ORTHO05D007035 1.1e-61 241.1 286 51.7
Potri.008G030300 Populus trichocarpa HOM05D005700 ORTHO05D007035 1.1e-61 241.1 324 48.1
BcaC06g32152 Brassica carinata HOM05D005700 ORTHO05D007035 2.4e-61 240.0 287 49.8
A10p31640 Brassica napus HOM05D005700 ORTHO05D007035 3.1e-61 239.6 300 48.7
BraA10t45210Z Brassica rapa HOM05D005700 ORTHO05D007035 3.1e-61 239.6 300 48.7
arahy.Tifrunner.gnm1.ann1.D7GKH1 Arachis hypogaea HOM05D005700 ORTHO05D007035 5.3e-61 238.8 167 78.4
Ciclev10032582m.g Citrus clementina HOM05D005700 ORTHO05D007035 9.1e-61 238.0 302 49.0
Glyma.10G102440 Glycine max HOM05D005700 ORTHO05D007035 1.2e-60 237.7 284 53.2
THA.LOC104823196 Tarenaya hassleriana HOM05D005700 ORTHO05D007035 1.2e-60 237.7 309 47.6
GSVIVG01016163001 Vitis vinifera HOM05D005700 ORTHO05D007035 1.2e-60 237.7 317 47.6
Atru.chr12.910 Acer truncatum HOM05D005700 ORTHO05D007035 1.5e-60 237.3 317 48.6
Migut.F01676 Erythranthe guttata HOM05D005700 ORTHO05D007035 1.5e-60 237.3 303 49.8
Prupe.2G094500 Prunus persica HOM05D005700 ORTHO05D007035 1.5e-60 237.3 284 51.1
Thhalv10014494m.g Eutrema salsugineum HOM05D005700 ORTHO05D007035 2.6e-60 236.5 331 45.6
Potri.010G230900 Populus trichocarpa HOM05D005700 ORTHO05D007035 2.6e-60 236.5 284 49.3
ECA238G2005 Erigeron canadensis HOM05D005700 ORTHO05D007035 4.5e-60 235.7 286 49.3
Sc20g0001510 Simmondsia chinensis HOM05D005700 ORTHO05D007035 5.9e-60 235.3 288 49.7
vmacro10263 Vaccinium macrocarpon HOM05D005700 ORTHO05D007035 5.9e-60 235.3 286 50.3
Manes.11G085375 Manihot esculenta HOM05D005700 ORTHO05D007035 7.7e-60 235.0 320 47.5
Actinidia34788 Actinidia chinensis HOM05D005700 ORTHO05D007035 1.0e-59 234.6 284 51.4
AL6G14080 Arabidopsis lyrata HOM05D005700 ORTHO05D007035 1.0e-59 234.6 287 49.1
Sabra10G0179000 Salix brachista HOM05D005700 ORTHO05D007035 1.7e-59 233.8 291 49.1
VMungo0720G2730 Vigna mungo HOM05D005700 ORTHO05D007035 2.2e-59 233.4 290 51.0
Sp6g38300 Schrenkiella parvula HOM05D005700 ORTHO05D007035 2.9e-59 233.0 280 49.6
SalBow6G6710 Salvia bowleyana HOM05D005700 ORTHO05D007035 3.8e-59 232.6 285 50.5
Peaxi162Scf01201g00017 Petunia axillaris HOM05D005700 ORTHO05D007035 8.5e-59 231.5 286 50.3
RcHm_v2.0_Chr1g0336111 Rosa chinensis HOM05D005700 ORTHO05D007035 8.5e-59 231.5 281 51.2
HanXRQChr11g0335951 Helianthus annuus HOM05D005700 ORTHO05D007035 1.1e-58 231.1 287 48.8
HanXRQChr14g0456161 Helianthus annuus HOM05D005700 ORTHO05D007035 1.1e-58 231.1 285 49.8
Lj2A24T67 Lonicera japonica HOM05D005700 ORTHO05D007035 2.5e-58 229.9 304 48.7
Sopen05g033880 Solanum pennellii HOM05D005700 ORTHO05D007035 3.2e-58 229.6 303 47.9
CAN.G1891.6 Capsicum annuum HOM05D005700 ORTHO05D007035 4.2e-58 229.2 282 49.3
Gorai.012G025500 Gossypium raimondii HOM05D005700 ORTHO05D007035 4.2e-58 229.2 341 46.3
Cpa.g.sc53.169 Carica papaya HOM05D005700 ORTHO05D007035 7.2e-58 228.4 284 49.6
MD07G1074500 Malus domestica HOM05D005700 ORTHO05D007035 7.2e-58 228.4 316 47.8
MSTRG.400 Avicennia marina HOM05D005700 ORTHO05D007035 9.4e-58 228.0 285 49.5
PGSC0003DMG400023376 Solanum tuberosum HOM05D005700 ORTHO05D007035 1.2e-57 227.6 303 47.5
Sed0005120 Sechium edule HOM05D005700 ORTHO05D007035 1.6e-57 227.3 285 50.2
Solyc05g055430.4 Solanum lycopersicum HOM05D005700 ORTHO05D007035 2.7e-57 226.5 303 47.5
PGR142G0169 Punica granatum HOM05D005700 ORTHO05D007035 7.9e-57 224.9 303 47.5
Sed0026830 Sechium edule HOM05D005700 ORTHO05D007035 7.9e-57 224.9 281 50.2
Glyma.U031112 Glycine max HOM05D005700 ORTHO05D007035 3.0e-56 223.0 260 53.5
FAN03G2335 Fragaria x ananassa HOM05D005700 ORTHO05D007035 5.1e-56 222.2 362 43.6
EL10Ac4g08634 Beta vulgaris HOM05D005700 ORTHO05D007035 6.7e-56 221.9 287 46.7
Cc02_g10560 Coffea canephora HOM05D005700 ORTHO05D007035 1.1e-55 221.1 319 46.1
Nn6g35199 Nelumbo nucifera HOM05D005700 ORTHO05D007035 2.0e-55 220.3 284 48.6
CDE09G1384 Ceratophyllum demersum HOM05D005700 ORTHO05D007035 3.3e-55 219.5 274 47.4
CANSAT56G1373 Cannabis sativa HOM05D005700 ORTHO05D007035 4.4e-55 219.2 318 46.5
Aqoxy1G01068 Aquilegia oxysepala HOM05D005700 ORTHO05D007035 4.8e-54 215.7 299 46.2
Hma1.2p1_0454F.1_g156240 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 6.3e-54 215.3 258 51.6
Lj1g0018185 Lotus japonicus HOM05D005700 ORTHO05D007035 7.0e-53 211.8 247 50.6
PSO339G4237 Papaver somniferum HOM05D005700 ORTHO05D007035 9.1e-53 211.5 278 46.0
PSO063G2079 Papaver somniferum HOM05D005700 ORTHO05D007035 1.2e-52 211.1 303 44.6
Lsat_1_v5_gn_2_103220 Lactuca sativa HOM05D005700 ORTHO05D007035 3.5e-52 209.5 285 47.0
HPP92_004967 Vanilla planifolia HOM05D005700 ORTHO05D007035 5.0e-51 205.7 314 41.7
ATR0043G051 Amborella trichopoda HOM05D005700 ORTHO05D007035 3.2e-50 203.0 271 45.8
FAN10G0584 Fragaria x ananassa HOM05D005700 ORTHO05D007035 1.2e-49 201.1 403 39.0
Thecc.10G089800 Theobroma cacao HOM05D005700 ORTHO05D007035 4.7e-49 199.1 300 45.7
Dinv31263 Davidia involucrata HOM05D005700 ORTHO05D007035 1.4e-48 197.6 267 47.9
ClCG08G007920 Citrullus lanatus HOM05D005700 ORTHO05D007035 3.9e-48 196.1 266 48.5
COL.COLO4_32883 Corchorus olitorius HOM05D005700 ORTHO05D007035 5.2e-48 195.7 259 49.8
AT5G04440 Arabidopsis thaliana HOM05D005700 ORTHO05D007035 6.7e-48 195.3 259 45.9
Carub.0006s0338 Capsella rubella HOM05D005700 ORTHO05D007035 2.0e-47 193.7 256 46.9
Duzib106G0901 Durio zibethinus HOM05D005700 ORTHO05D007035 5.7e-47 192.2 249 47.8
MELO3C019851.2 Cucumis melo HOM05D005700 ORTHO05D007035 1.7e-46 190.7 234 50.9
FvH4_7g06650 Fragaria vesca HOM05D005700 ORTHO05D007035 1.7e-46 190.7 269 46.5
C09p72310 Brassica napus HOM05D005700 ORTHO05D007035 3.7e-46 189.5 299 42.1
BolC9t59975H Brassica oleracea HOM05D005700 ORTHO05D007035 3.7e-46 189.5 299 42.1
Oeu046658.1 Olea europaea HOM05D005700 ORTHO05D007035 3.7e-46 189.5 264 45.8
Aa31LG11G5310 Aethionema arabicum HOM05D005700 ORTHO05D007035 8.2e-46 188.3 276 43.8
TWI38G0818 Tripterygium wilfordii HOM05D005700 ORTHO05D007035 1.4e-45 187.6 277 43.3
TAR369G0971 Trochodendron aralioides HOM05D005700 ORTHO05D007035 5.3e-45 185.7 255 46.3
Glyma.02G164300 Glycine max HOM05D005700 ORTHO05D007035 3.5e-44 183.0 146 69.9
MBI11_g29032_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 4.5e-44 182.6 267 44.9
Nn3g19086 Nelumbo nucifera HOM05D005700 ORTHO05D007035 7.7e-44 181.8 267 45.7
Zm00001eb003780 Zea mays HOM05D005700 ORTHO05D007035 1.3e-43 181.0 247 44.9
SMO196G0037 Selaginella moellendorffii HOM05D005700 ORTHO05D007035 2.9e-43 179.9 255 43.5
Pp3c1_19240 Physcomitrium patens HOM05D005700 ORTHO05D007035 9.4e-42 174.9 271 39.1
Mapoly0083s0065 Marchantia polymorpha HOM05D005700 ORTHO05D007035 1.6e-41 174.1 272 39.0
CBR_g10878 Chara braunii HOM05D005700 ORTHO05D007035 1.5e-39 167.5 254 41.7
AagrBONN_evm.TU.Sc2ySwM_228.955 Anthoceros agrestis HOM05D005700 ORTHO05D007035 1.7e-38 164.1 255 40.4
BolC3t12759H Brassica oleracea HOM05D005700 ORTHO05D007035 2.2e-38 163.7 266 40.2
Hma1.2p1_1040F.1_g250960 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 6.1e-33 145.6 99 75.8
CARHR208820 Cardamine hirsuta HOM05D005700 ORTHO05D007035 1.4e-32 144.4 109 68.8
CSS0017585 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 5.2e-32 142.5 208 45.7
CSS0044057 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 1.5e-31 141.0 244 40.6
Sabra08G0020300 Salix brachista HOM05D000437 ORTHO05D000324 1.5e-31 141.0 141 57.4
MBI19_g03561_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 3.4e-31 139.8 94 73.4
CSS0044078 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 2.2e-30 137.1 223 42.2
AUR62022764 Chenopodium quinoa HOM05D005700 ORTHO05D007035 2.2e-30 137.1 94 72.3
Nitab4.5_0002692g0080 Nicotiana tabacum HOM05D005700 ORTHO05D007035 2.2e-30 137.1 132 59.1
BcaB01g05899 Brassica carinata HOM05D005700 ORTHO05D007035 4.8e-30 136.0 92 71.7
C03p02060 Brassica napus HOM05D005700 ORTHO05D007035 4.8e-30 136.0 92 71.7
arahy.Tifrunner.gnm1.ann1.PLH1MA Arachis hypogaea HOM05D005700 ORTHO05D007035 8.3e-30 135.2 71 98.6
AUR62029215 Chenopodium quinoa HOM05D005700 ORTHO05D007035 1.4e-29 134.4 94 71.3
CsaV3_2G032730 Cucumis sativus L. HOM05D005700 ORTHO05D007035 1.7e-27 127.5 114 62.3
unitig_749.g13568 Utricularia gibba HOM05D005700 ORTHO05D007035 6.6e-27 125.6 94 68.1
Cre06.g264550 Chlamydomonas reinhardtii HOM05D005700 ORTHO05D007035 4.7e-25 119.4 303 31.7
PRCOL_00003535 Prasinoderma coloniale HOM05D005700 ORTHO05D007035 4.7e-25 119.4 274 31.4
SEGI_13772 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 8.0e-25 118.6 94 62.8
FAN10G1117 Fragaria x ananassa HOM05D005700 ORTHO05D007035 1.4e-24 117.9 144 52.8
A03p01690 Brassica napus HOM05D005700 ORTHO05D007035 8.6e-19 98.6 72 66.7
BraA03t09544Z Brassica rapa HOM05D005700 ORTHO05D007035 9.5e-18 95.1 72 65.3
Os03g0146500 Oryza sativa ssp. japonica HOM05D005700 ORTHO05D007035 5.2e-16 89.4 75 62.7
MBI11_g23276_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 2.6e-15 87.0 70 62.9
BcaB01g05900 Brassica carinata HOM05D005700 ORTHO05D007035 5.8e-15 85.9 65 64.6
MCO14G381 Micromonas commoda HOM05D005700 ORTHO05D007035 9.8e-15 85.1 254 30.3
TPR.G7611 Trifolium pratense HOM05D001538 ORTHO05D000007 1.7e-14 84.3 57 82.5
PRCOL_00001490 Prasinoderma coloniale HOM05D005700 ORTHO05D007035 7.0e-13 79.0 258 24.0
SEGI_20571 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 2.0e-12 77.4 104 43.3
ECA233G6102 Erigeron canadensis HOM05D005700 ORTHO05D007035 1.2e-07 61.6 40 72.5
Zm00001eb006030 Zea mays HOM05D005700 ORTHO05D007035 1.5e-07 61.2 73 49.3
Zm00001eb313560 Zea mays HOM05D005700 ORTHO05D007035 1.5e-07 61.2 81 44.4


User provided reference genes

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