Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 3.2e-100 368.6 215 100.0
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 2.1e-99 365.9 215 99.1
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 3.4e-57 225.7 218 55.5
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 1.8e-55 219.9 213 63.8
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 2.3e-53 213.0 215 64.7
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 3.0e-53 212.6 218 64.7
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 4.7e-51 205.3 215 60.9
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 2.9e-48 196.1 219 60.3
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 7.0e-47 191.4 245 55.5
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 8.6e-45 184.5 216 60.2
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 1.4e-42 177.2 214 53.7
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 3.7e-40 169.1 233 53.6
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 1.2e-30 137.5 214 47.7
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 4.7e-27 125.6 225 42.2
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 6.2e-27 125.2 215 41.9
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 1.1e-26 124.4 187 47.1
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 8.9e-26 121.3 216 42.6
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 7.6e-25 118.2 168 50.6
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.7e-24 117.1 216 44.9
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 2.2e-24 116.7 140 42.1
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 1.9e-23 113.6 148 42.6
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 1.9e-23 113.6 165 50.9
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 3.2e-23 112.8 196 45.4
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 7.1e-23 111.7 162 55.6
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 9.3e-23 111.3 164 39.6
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 9.3e-23 111.3 143 55.2
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 1.6e-22 110.5 219 44.3
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 7.8e-22 108.2 125 59.2
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 1.0e-21 107.8 127 44.1
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 1.0e-21 107.8 127 44.1
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 1.3e-21 107.5 140 50.7
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 1.7e-21 107.1 168 46.4
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 1.7e-21 107.1 219 41.1
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 3.0e-21 106.3 127 62.2
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 3.0e-21 106.3 159 48.4
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 6.6e-21 105.1 121 58.7
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 6.6e-21 105.1 186 42.5
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 8.7e-21 104.8 183 41.5
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 8.7e-21 104.8 205 41.5
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 1.5e-20 104.0 166 45.8
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 1.9e-20 103.6 159 47.8
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 5.6e-20 102.1 149 41.6
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 7.3e-20 101.7 169 40.8
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 7.3e-20 101.7 189 44.4
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 7.3e-20 101.7 191 35.6
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 9.6e-20 101.3 164 49.4
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 1.6e-19 100.5 220 38.6
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 1.6e-19 100.5 201 37.3
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 2.1e-19 100.1 138 38.4
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 2.8e-19 99.8 165 47.3
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 2.8e-19 99.8 127 44.9
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 2.8e-19 99.8 178 39.3
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 4.0e-18 95.9 125 54.4
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 6.9e-18 95.1 137 50.4
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 9.0e-18 94.7 179 36.3
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 9.0e-18 94.7 179 35.2
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.2e-17 94.4 129 53.5
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.2e-17 94.4 149 47.0
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 2.0e-17 93.6 120 50.8
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 2.0e-17 93.6 157 36.3
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 5.8e-17 92.0 161 42.9
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 5.8e-17 92.0 126 50.0
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 7.6e-17 91.7 126 48.4
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 2.2e-16 90.1 122 54.1
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 6.4e-16 88.6 131 50.4
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 3.2e-15 86.3 122 50.0
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 3.2e-15 86.3 188 41.0
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 7.1e-15 85.1 160 38.1
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 7.1e-15 85.1 121 37.2
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 4.6e-14 82.4 189 37.6
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 4.6e-14 82.4 124 33.9
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 1.0e-13 81.3 120 54.2
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 1.3e-13 80.9 208 36.5
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.3e-13 80.9 173 48.6
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 1.8e-13 80.5 99 51.5
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 2.3e-13 80.1 161 38.5
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 2.3e-13 80.1 161 38.5
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 2.3e-13 80.1 197 39.6
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 6.7e-13 78.6 124 33.1
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 8.7e-13 78.2 160 39.4
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.1e-12 77.8 133 46.6
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 1.1e-12 77.8 160 38.1
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 1.1e-12 77.8 202 38.1
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 9.6e-12 74.7 173 41.6
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 9.6e-12 74.7 99 47.5
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 1.3e-11 74.3 118 55.1
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 2.1e-11 73.6 120 50.8
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 2.8e-11 73.2 120 45.8
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 2.8e-11 73.2 118 45.8
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 1.1e-10 71.2 160 42.5
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.1e-10 69.7 64 54.7
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 4.0e-10 69.3 117 43.6
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 5.3e-10 68.9 163 39.3
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 9.0e-10 68.2 137 35.0
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 1.5e-09 67.4 144 34.0
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 3.4e-09 66.2 164 26.8
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 5.8e-09 65.5 121 35.5
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 5.8e-09 65.5 72 51.4
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 9.9e-09 64.7 122 41.0
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 2.2e-08 63.5 70 47.1
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 2.2e-08 63.5 122 45.9
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 2.2e-08 63.5 128 41.4
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 6.4e-08 62.0 114 43.0
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.1e-07 61.2 108 44.4
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.9e-07 60.5 105 45.7
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.4e-07 60.1 108 44.4
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 2.4e-07 60.1 121 43.0
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.2e-07 59.7 189 38.1
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 4.2e-07 59.3 98 57.1
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.5e-07 58.9 189 37.6
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 5.5e-07 58.9 151 30.5
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 9.3e-07 58.2 112 42.9
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 9.3e-07 58.2 128 36.7
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.6e-06 57.4 155 34.8
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 1.6e-06 57.4 108 44.4
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 2.1e-06 57.0 129 41.9
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 2.7e-06 56.6 118 37.3
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 4.6e-06 55.8 126 43.7
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 6.0e-06 55.5 127 43.3
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 6.0e-06 55.5 204 34.3
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 7.9e-06 55.1 147 38.8
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 7.9e-06 55.1 112 38.4
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 7.9e-06 55.1 161 36.0


User provided reference genes

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