Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 7.4e-161 570.5 286 100.0
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 5.2e-122 441.4 308 72.7
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 5.2e-122 441.4 308 72.7
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.3e-120 436.8 307 72.3
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 7.0e-119 431.0 307 71.0
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.6e-118 429.9 303 72.9
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.7e-118 429.1 303 72.6
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.8e-114 416.4 304 70.4
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 2.6e-113 412.5 305 69.5
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 4.9e-112 408.3 308 68.5
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 4.9e-104 381.7 277 67.9
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 7.1e-103 377.9 312 63.1
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.1e-102 376.3 308 62.7
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.3e-101 373.6 308 62.3
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 2.3e-101 372.9 309 62.5
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.5e-100 370.2 308 62.0
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 2.6e-97 359.4 311 59.8
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 4.4e-97 358.6 309 61.2
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 5.8e-97 358.2 308 62.0
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 1.3e-96 357.1 311 62.4
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.3e-96 357.1 311 60.8
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 2.2e-96 356.3 314 58.9
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 2.9e-96 355.9 307 60.9
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 4.9e-96 355.1 311 62.4
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 8.4e-96 354.4 309 60.2
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.1e-95 354.0 314 59.6
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.9e-95 353.2 308 58.8
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.4e-95 352.8 314 61.1
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 3.2e-95 352.4 309 59.2
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.1e-95 351.3 310 59.7
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 2.7e-94 349.4 312 58.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 2.7e-94 349.4 311 59.2
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 2.7e-94 349.4 309 58.3
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.5e-94 349.0 310 59.4
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 3.5e-94 349.0 307 59.9
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.6e-94 348.6 308 59.4
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 7.8e-94 347.8 311 58.2
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.3e-93 347.1 322 57.8
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 8.6e-93 344.4 311 58.8
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.1e-92 344.0 268 65.3
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.9e-92 343.2 328 55.8
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 2.5e-92 342.8 335 55.5
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 2.1e-91 339.7 314 59.2
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 2.1e-91 339.7 312 58.7
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 4.7e-91 338.6 316 59.2
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 6.2e-91 338.2 318 55.7
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 6.2e-91 338.2 309 57.9
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.4e-90 337.0 312 58.0
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.8e-90 336.7 313 57.5
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.4e-90 336.3 313 56.5
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 6.8e-90 334.7 313 56.9
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 8.9e-90 334.3 309 57.0
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.0e-89 333.2 302 56.3
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 2.6e-89 332.8 315 57.1
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 4.4e-89 332.0 282 61.3
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.3e-88 330.5 304 58.6
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.3e-88 330.5 310 54.5
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.7e-88 330.1 311 56.3
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 4.9e-88 328.6 313 55.9
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 3.2e-87 325.9 311 54.7
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 4.2e-87 325.5 314 54.1
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 5.4e-87 325.1 313 55.3
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 6.0e-86 321.6 280 59.6
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.7e-85 320.1 313 55.3
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.7e-85 320.1 280 57.1
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.7e-85 320.1 305 59.0
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.3e-85 319.7 315 54.3
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.1e-84 317.4 311 55.9
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 4.3e-84 315.5 279 58.8
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 9.6e-84 314.3 309 54.7
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 9.6e-84 314.3 283 56.9
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.3e-83 313.9 280 59.6
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 3.6e-83 312.4 311 54.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 4.8e-83 312.0 302 54.6
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 8.1e-83 311.2 327 52.6
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.1e-82 310.8 281 55.5
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.8e-82 310.1 307 54.4
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 4.0e-82 308.9 312 54.2
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 5.3e-82 308.5 327 52.0
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 2.0e-81 306.6 322 50.0
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 3.4e-81 305.8 314 52.9
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 2.2e-80 303.1 324 51.9
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.6e-78 297.0 309 53.7
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 3.5e-78 295.8 275 58.5
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 4.6e-78 295.4 317 51.7
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.3e-77 293.9 313 52.1
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.7e-77 293.5 274 54.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 8.7e-77 291.2 317 50.8
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.7e-77 291.2 315 52.4
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 8.7e-77 291.2 310 50.6
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.5e-76 290.4 318 51.3
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.5e-76 289.7 315 51.1
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.5e-76 289.7 313 50.8
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.3e-76 289.3 315 51.1
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 3.3e-76 289.3 315 51.1
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 7.4e-76 288.1 240 64.2
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 9.6e-76 287.7 279 54.8
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.6e-75 287.0 283 55.1
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 3.6e-75 285.8 315 51.1
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 6.2e-75 285.0 315 50.2
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 6.2e-75 285.0 315 50.2
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 6.2e-75 285.0 317 50.5
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.4e-74 283.9 317 49.8
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 4.0e-74 282.3 314 50.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 4.0e-74 282.3 317 50.5
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.2e-73 280.8 290 51.7
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.2e-73 280.8 317 50.2
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.2e-73 280.8 317 50.2
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.2e-73 280.8 317 50.2
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.3e-72 277.3 248 55.6
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.5e-68 263.8 243 59.7
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 3.3e-68 262.7 220 64.1
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 8.1e-67 258.1 268 51.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 6.9e-66 255.0 233 59.2
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 9.0e-66 254.6 265 53.6
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 2.0e-65 253.4 279 48.7
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 3.8e-64 249.2 265 50.6
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 4.9e-64 248.8 250 55.2
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.6e-62 243.8 276 48.2
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 6.0e-62 241.9 315 44.8
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 8.7e-61 238.0 287 43.9
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.6e-51 207.2 200 55.0
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 3.7e-43 179.5 277 39.0
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 9.4e-39 164.9 184 53.8
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.8e-37 160.6 192 46.4
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.3e-36 156.4 169 50.3
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 8.5e-32 141.7 136 52.9
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.5e-31 141.0 97 72.2
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.9e-31 140.6 107 64.5
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 3.7e-27 126.3 109 52.3
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 6.8e-13 79.0 246 30.5


User provided reference genes

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