Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.2e-127 458.4 226 100.0
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-113 413.3 203 99.5
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.2e-91 339.3 217 82.5
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.6e-76 289.3 211 72.5
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 9.9e-68 260.8 231 60.6
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.7e-59 233.4 233 56.7
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.9e-58 229.9 232 57.8
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 4.2e-58 228.8 235 56.6
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.6e-57 226.9 221 57.5
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.4e-53 213.0 207 56.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.7e-51 206.8 207 54.6
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 2.9e-51 206.1 209 55.0
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 2.9e-51 206.1 234 52.6
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.2e-49 200.7 224 48.2
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.3e-48 196.4 207 52.2
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.1e-48 195.3 206 50.0
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 8.7e-48 194.5 227 47.6
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 8.7e-48 194.5 203 50.7
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.1e-47 194.1 229 47.6
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.5e-47 193.7 199 52.3
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.3e-47 192.2 182 54.4
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 7.4e-47 191.4 185 53.0
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 9.7e-47 191.0 231 45.0
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.6e-46 190.3 215 49.8
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.6e-46 190.3 209 49.8
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 2.8e-46 189.5 206 47.1
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 2.8e-46 189.5 220 48.6
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 6.3e-46 188.3 198 52.5
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.8e-45 186.8 225 45.8
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 2.4e-45 186.4 230 46.5
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 9.0e-45 184.5 211 45.0
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.2e-44 184.1 192 49.5
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.2e-44 184.1 210 47.1
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 2.6e-44 183.0 207 47.8
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.6e-44 183.0 229 43.7
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 7.7e-44 181.4 227 46.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.0e-43 181.0 224 46.9
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.3e-43 180.6 224 45.1
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.2e-43 179.9 217 45.2
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 2.9e-43 179.5 210 45.2
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 2.9e-43 179.5 210 45.2
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.9e-43 179.5 203 44.3
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.9e-43 179.5 218 43.6
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 2.9e-43 179.5 207 46.4
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 5.0e-43 178.7 195 47.2
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 5.0e-43 178.7 205 45.9
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 6.5e-43 178.3 200 45.5
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 8.5e-43 177.9 218 43.6
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 8.5e-43 177.9 224 46.0
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 8.5e-43 177.9 202 47.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.1e-42 177.6 227 45.4
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.9e-42 176.8 200 46.0
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.5e-42 176.4 195 47.7
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.5e-42 176.4 207 45.9
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 3.2e-42 176.0 226 46.5
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 5.5e-42 175.3 186 50.5
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 9.4e-42 174.5 214 46.3
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.2e-41 174.1 238 42.4
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-41 173.7 200 46.5
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-41 173.7 232 40.5
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.1e-41 173.3 222 45.9
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.1e-41 173.3 227 43.2
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.7e-41 172.9 221 43.4
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 6.1e-41 171.8 207 45.9
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 7.9e-41 171.4 190 45.3
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 7.9e-41 171.4 190 45.3
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.0e-40 171.0 206 42.7
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.0e-40 171.0 162 58.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-40 170.6 225 42.7
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.4e-40 170.6 225 41.3
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.4e-40 170.6 232 43.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.8e-40 170.2 207 43.0
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.8e-40 170.2 201 46.3
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.3e-40 169.9 226 40.7
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 3.0e-40 169.5 191 44.5
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 6.7e-40 168.3 207 43.5
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 6.7e-40 168.3 218 41.3
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 8.8e-40 167.9 253 40.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-39 167.5 231 41.6
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.5e-39 167.2 229 40.6
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.0e-39 166.8 232 39.7
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-39 166.4 190 47.4
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.5e-39 166.4 190 47.4
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.5e-39 166.4 207 44.0
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 3.3e-39 166.0 190 45.3
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 4.3e-39 165.6 235 40.4
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 5.7e-39 165.2 215 43.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 7.4e-39 164.9 209 43.1
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 9.7e-39 164.5 223 42.2
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-38 164.1 228 40.8
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-38 164.1 228 40.8
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.8e-38 162.9 207 41.5
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.8e-38 162.9 200 45.5
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 6.3e-38 161.8 226 41.2
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 8.2e-38 161.4 211 40.3
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.8e-37 160.2 218 41.7
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 4.1e-37 159.1 207 43.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.0e-36 156.8 232 39.7
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 2.0e-36 156.8 202 40.6
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.0e-36 156.8 228 39.0
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 5.9e-36 155.2 201 41.8
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.0e-35 154.5 225 42.2
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.3e-35 154.1 152 50.7
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-35 154.1 241 39.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 2.9e-35 152.9 194 46.4
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.4e-34 150.6 203 42.4
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.1e-33 146.7 206 40.3
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 2.7e-33 146.4 187 42.2
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 7.9e-33 144.8 198 40.4
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.0e-32 144.4 213 39.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.4e-32 144.1 219 38.4
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-31 141.0 188 41.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 9.7e-31 137.9 223 37.7
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.3e-30 137.5 162 46.9
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.2e-30 136.7 195 41.5
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 8.2e-30 134.8 198 36.9
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.4e-29 134.0 221 41.2
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.4e-29 133.3 189 39.7
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.5e-28 129.0 234 32.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.0e-27 127.9 199 39.2
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 5.0e-27 125.6 176 44.3
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.5e-27 125.2 220 38.6
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 4.7e-25 119.0 162 43.2
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 6.3e-22 108.6 228 34.2
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.8e-21 107.1 127 44.9
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 9.1e-21 104.8 126 48.4
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.0e-20 103.6 99 54.5
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 7.7e-20 101.7 185 31.4
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.1e-18 97.8 81 61.7
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 4.2e-18 95.9 108 51.9
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 3.6e-17 92.8 134 37.3
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.0e-16 89.4 59 57.6
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 5.2e-16 89.0 44 79.5
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 2.0e-15 87.0 102 48.0
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.3e-14 84.3 108 44.4
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.2e-14 83.6 59 55.9
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.4e-13 80.9 58 56.9
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.0e-13 78.6 65 61.5
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.6e-12 77.4 77 49.4
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 6.5e-11 72.0 44 63.6
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.8e-08 63.9 77 44.2
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.6e-07 60.1 123 35.0
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 5.7e-07 58.9 39 53.8
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 1.3e-06 57.8 50 48.0
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 3.7e-06 56.2 24 83.3


User provided reference genes

Program Settings