Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1420.6 697 100.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1418.3 697 99.7
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1328.9 698 91.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1317.8 697 91.0
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1317.8 697 91.1
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1315.8 697 90.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1315.4 697 90.5
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1314.7 697 90.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1309.3 697 89.5
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1303.9 697 90.2
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1303.1 693 89.8
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1303.1 697 90.0
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1289.6 698 88.4
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1244.6 698 84.8
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1241.1 698 84.4
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1238.8 698 84.4
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1236.9 698 84.4
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1233.8 698 84.8
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1230.3 697 84.2
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1214.9 692 83.5
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1214.5 696 82.6
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1213.0 698 83.2
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1211.4 698 83.0
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1208.0 698 82.8
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1206.8 692 82.8
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 698 82.1
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1202.2 695 82.0
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1201.8 694 82.7
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1198.7 694 83.0
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1197.6 695 81.7
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1196.4 694 83.0
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1194.5 700 81.9
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1193.7 698 82.2
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1193.7 695 81.2
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1192.9 694 82.1
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1192.2 694 82.3
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1191.8 695 81.9
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1191.8 699 81.3
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 693 81.8
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 676 83.6
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 694 81.3
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1189.1 698 80.5
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 695 81.3
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 697 80.6
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1175.2 698 79.7
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 695 80.0
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 720 78.6
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 698 78.5
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 695 79.9
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 693 81.7
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1167.9 695 81.3
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 693 80.4
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 697 79.9
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 694 80.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1162.1 695 80.1
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1161.0 694 79.1
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1159.8 695 78.7
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1159.8 693 80.7
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 698 79.9
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1156.7 695 79.9
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1156.7 695 79.7
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 695 79.7
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1155.2 695 79.6
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1154.8 700 78.9
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 694 78.4
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 695 78.8
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1151.3 695 79.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1151.3 694 78.5
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 692 79.8
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1149.0 694 78.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1149.0 694 78.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 697 78.5
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 696 79.6
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 695 77.8
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 694 78.1
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 694 77.5
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 696 78.2
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 696 78.2
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 698 78.5
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 694 76.8
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1119.0 718 75.6
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1117.1 698 77.9
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 680 78.4
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1112.8 693 76.2
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1111.3 680 78.4
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1107.0 747 72.2
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1101.3 692 76.6
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1100.9 740 73.8
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1100.9 718 74.8
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1100.5 647 79.8
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 698 74.8
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1098.2 699 76.5
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1092.4 719 73.3
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1087.4 615 84.1
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1082.4 695 77.4
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1081.6 699 74.7
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.7e-310 1067.4 678 75.1
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 3.7e-307 1057.7 698 75.1
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.6e-300 1035.0 585 83.2
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.2e-297 1026.2 702 71.5
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.0e-296 1023.1 705 71.3
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 6.4e-291 1003.8 695 70.6
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 1.2e-281 973.0 641 74.3
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 6.0e-273 944.1 539 83.1
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.2e-265 919.8 712 67.4
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.0e-259 900.2 581 73.7
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 5.7e-239 831.2 699 58.9
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 4.1e-237 825.1 538 74.0
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 9.4e-226 787.3 471 79.6
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.0e-223 779.6 701 56.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.0e-223 779.6 701 56.2
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 9.7e-223 777.3 697 55.2
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.7e-220 769.2 703 55.3
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.8e-216 756.5 704 54.8
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 8.3e-214 747.7 710 56.1
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 8.0e-193 677.9 386 82.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.9e-157 560.5 719 43.9
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.7e-148 530.0 375 69.9
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 6.7e-139 498.8 504 55.2
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 5.0e-110 402.9 248 78.6
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 3.0e-107 393.7 767 34.9
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 3.1e-104 383.6 811 32.3
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 6.3e-97 359.4 268 65.3
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 9.1e-96 355.5 344 55.8
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.6e-76 291.6 247 60.7
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 8.0e-76 289.3 251 61.0
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 4.0e-75 287.0 179 76.0
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 2.3e-70 271.2 184 71.7
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 7.3e-69 266.2 165 77.6
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 9.9e-66 255.8 620 32.9
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 2.8e-60 237.7 235 52.8
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.3e-49 202.2 134 71.6
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 7.3e-45 186.4 138 73.9
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.6e-42 177.9 144 66.0
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.4e-35 155.6 95 75.8
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 5.8e-34 150.2 232 41.8
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.0e-30 139.4 76 85.5
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 3.0e-30 137.9 75 84.0
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.9e-25 121.3 84 66.7
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 6.5e-17 93.6 85 51.8
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 2.1e-15 88.6 87 52.9
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 9.7e-13 79.7 50 76.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 8.2e-12 76.6 50 70.0
HanXRQChr15g0473031 Helianthus annuus HOM05D005163 ORTHO05D220685 8.8e-06 56.6 32 84.4


User provided reference genes

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