Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 3.5e-180 634.8 310 100.0
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 1.6e-177 625.9 310 96.5
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 1.6e-129 466.5 305 71.8
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 1.1e-128 463.8 269 76.6
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 1.4e-128 463.4 257 78.6
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 5.8e-127 458.0 303 71.6
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 9.9e-127 457.2 293 71.3
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 8.4e-126 454.1 282 74.5
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 7.9e-124 447.6 294 70.7
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 3.7e-121 438.7 297 70.4
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-117 427.2 207 98.6
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 7.9e-116 421.0 254 73.6
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 9.6e-114 414.1 265 70.2
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 6.9e-112 407.9 282 65.2
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 2.0e-111 406.4 250 71.2
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 2.6e-111 406.0 254 70.5
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 2.2e-110 402.9 254 68.9
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 3.8e-110 402.1 307 61.9
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 7.9e-108 394.4 285 64.2
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 1.0e-107 394.0 261 67.4
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 2.3e-107 392.9 267 67.4
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 5.1e-107 391.7 254 66.9
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 1.1e-106 390.6 306 60.5
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 4.3e-106 388.7 274 63.9
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 1.6e-105 386.7 254 66.5
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 2.2e-105 386.3 251 69.3
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 2.2e-105 386.3 265 64.5
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 6.3e-105 384.8 306 59.8
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 8.2e-105 384.4 307 60.3
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 1.4e-104 383.6 264 64.8
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 3.1e-104 382.5 292 60.6
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 9.0e-104 380.9 254 66.5
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 1.2e-103 380.6 262 64.1
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 1.5e-103 380.2 250 66.8
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 2.0e-103 379.8 270 65.2
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 3.4e-103 379.0 285 62.1
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 7.6e-103 377.9 295 59.7
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 2.2e-102 376.3 256 62.5
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.2e-102 376.3 252 65.1
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 3.8e-102 375.6 270 61.9
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 5.0e-102 375.2 251 64.1
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 6.5e-102 374.8 256 62.1
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 8.5e-102 374.4 249 64.3
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 8.5e-102 374.4 249 64.3
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 1.1e-101 374.0 251 64.9
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 1.4e-101 373.6 251 63.7
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.5e-101 372.9 252 64.7
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 4.2e-101 372.1 275 60.4
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 7.2e-101 371.3 251 63.3
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 7.2e-101 371.3 251 62.9
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 9.3e-101 370.9 249 63.9
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 4.6e-100 368.6 251 63.3
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 6.1e-100 368.2 262 60.7
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 7.9e-100 367.9 272 61.4
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 1.0e-99 367.5 253 66.0
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 8.7e-99 364.4 285 59.3
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 8.7e-99 364.4 286 60.5
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 7.4e-98 361.3 237 66.7
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 2.8e-97 359.4 255 62.0
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 3.7e-97 359.0 306 57.8
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 4.8e-97 358.6 268 61.6
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 1.5e-95 353.6 262 63.0
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 3.4e-95 352.4 252 61.9
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 1.7e-94 350.1 272 57.7
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 2.2e-94 349.7 237 67.1
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 3.8e-94 349.0 237 66.7
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 8.5e-94 347.8 302 55.3
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 1.1e-93 347.4 234 67.1
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 4.7e-92 342.0 277 57.0
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 1.4e-91 340.5 247 62.3
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 1.8e-91 340.1 240 62.9
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 6.7e-91 338.2 276 58.7
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 2.8e-89 332.8 305 54.8
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 6.3e-89 331.6 305 56.1
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 9.1e-88 327.8 251 60.2
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 2.6e-87 326.2 261 59.0
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 4.7e-84 315.5 264 53.4
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 3.2e-77 292.7 265 54.0
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 2.3e-75 286.6 288 50.0
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 6.7e-75 285.0 252 52.4
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 1.4e-72 277.3 301 48.2
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 1.6e-71 273.9 219 57.1
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 1.6e-68 263.8 182 69.2
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 9.5e-61 238.0 235 50.2
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 3.4e-58 229.6 110 97.3
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 9.2e-56 221.5 256 44.5
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 3.5e-55 219.5 135 68.9
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.7e-54 217.2 181 54.7
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 1.1e-53 214.5 248 40.7
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 2.3e-51 206.8 255 39.6
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 4.3e-45 186.0 118 72.0
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 4.7e-44 182.6 84 97.6
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 1.3e-41 174.5 263 35.0
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 1.0e-38 164.9 106 63.2
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 9.9e-34 148.3 84 73.8
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-30 137.5 73 93.2
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 1.7e-30 137.5 73 93.2
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 5.1e-30 136.0 119 58.0
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 4.0e-27 126.3 295 27.8
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 2.9e-25 120.2 53 100.0
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 2.9e-25 120.2 53 100.0
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 1.6e-23 114.4 83 56.6
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 1.7e-22 110.9 61 72.1
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.9e-21 107.5 58 87.9
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.9e-21 107.5 58 87.9
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 5.8e-18 95.9 65 66.2
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 6.0e-15 85.9 42 90.5
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 1.1e-13 81.6 59 54.2
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 5.3e-11 72.8 54 59.3
arahy.Tifrunner.gnm1.ann1.9CXT3Z Arachis hypogaea HOM05D035740 ORTHO05D082897 1.5e-10 71.2 41 85.4
arahy.Tifrunner.gnm1.ann1.C9SE0R Arachis hypogaea HOM05D035740 ORTHO05D086213 1.5e-10 71.2 41 85.4
arahy.Tifrunner.gnm1.ann1.CEJV2N Arachis hypogaea HOM05D035740 ORTHO05D082514 1.5e-10 71.2 41 85.4
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.2e-09 67.4 86 44.2
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 2.2e-09 67.4 68 39.7
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 2.4e-08 63.9 32 78.1
Hund18614 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.6e-07 61.2 47 59.6
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 2.3e-06 57.4 46 50.0


User provided reference genes

Program Settings