Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U02M06 Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 2439.1 1259 100.0
arahy.Tifrunner.gnm1.ann1.11NKIJ Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 2434.4 1259 99.8
Glyma.07G125200 Glycine max HOM05D004751 ORTHO05D005819 0.0e+00 2125.9 1267 86.7
Lj2g0020264 Lotus japonicus HOM05D004751 ORTHO05D005819 0.0e+00 2125.5 1266 86.5
Glyma.01G006600 Glycine max HOM05D004751 ORTHO05D005819 0.0e+00 2110.5 1267 86.2
Lalb_Chr14g0371941 Lupinus albus HOM05D004751 ORTHO05D005819 0.0e+00 2102.4 1267 85.4
VMungo0464G0426 Vigna mungo HOM05D004751 ORTHO05D005819 0.0e+00 2094.7 1267 85.0
Psat1g048040 Pisum sativum HOM05D004751 ORTHO05D005819 0.0e+00 2089.3 1268 84.9
Ca_25582_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 0.0e+00 2084.7 1268 85.0
Medtr6g088835 Medicago truncatula HOM05D004751 ORTHO05D005819 0.0e+00 2082.0 1268 84.9
TPR.G31000 Trifolium pratense HOM05D004751 ORTHO05D005819 0.0e+00 2069.7 1267 84.5
Phvul.004G175100 Phaseolus vulgaris HOM05D004751 ORTHO05D005819 0.0e+00 2031.9 1267 83.7
QL02p040907 Quercus lobata HOM05D004751 ORTHO05D005819 0.0e+00 1829.3 1281 74.8
Haze_25834 Corylus avellana HOM05D004751 ORTHO05D005819 0.0e+00 1814.7 1284 74.5
Cfa003165 Carpinus fangiana HOM05D004751 ORTHO05D005819 0.0e+00 1808.9 1284 74.1
Thecc.09G099100 Theobroma cacao HOM05D004751 ORTHO05D005819 0.0e+00 1794.6 1292 72.3
arahy.Tifrunner.gnm1.ann1.YRLX64 Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1794.2 1262 73.3
Duzib150G1241 Durio zibethinus HOM05D004751 ORTHO05D005819 0.0e+00 1786.2 1283 72.3
Prupe.2G065200 Prunus persica HOM05D004751 ORTHO05D005819 0.0e+00 1784.2 1280 73.2
Manes.16G108000 Manihot esculenta HOM05D004751 ORTHO05D005819 0.0e+00 1775.4 1281 73.1
arahy.Tifrunner.gnm1.ann1.9BR2YY Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1775.0 1262 72.7
RcHm_v2.0_Chr1g0331571 Rosa chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1774.6 1286 72.0
Atru.chr7.1477 Acer truncatum HOM05D004751 ORTHO05D005819 0.0e+00 1756.5 1292 71.6
Dinv42256 Davidia involucrata HOM05D004751 ORTHO05D005819 0.0e+00 1756.1 1283 71.9
MD07G1058300 Malus domestica HOM05D004751 ORTHO05D005819 0.0e+00 1746.1 1286 71.5
Ciclev10007242m.g Citrus clementina HOM05D004751 ORTHO05D005819 0.0e+00 1744.9 1285 72.1
MD02G1262100 Malus domestica HOM05D004751 ORTHO05D005819 0.0e+00 1737.2 1286 71.8
FvH4_7g05110 Fragaria vesca HOM05D004751 ORTHO05D005819 0.0e+00 1732.2 1283 71.1
Gohir.D05G027800 Gossypium hirsutum HOM05D004751 ORTHO05D005819 0.0e+00 1729.1 1292 70.0
Gorai.009G028000 Gossypium raimondii HOM05D004751 ORTHO05D005819 0.0e+00 1727.2 1292 70.0
FAN06G4551 Fragaria x ananassa HOM05D004751 ORTHO05D005819 0.0e+00 1726.5 1287 70.9
Gohir.A05G026300 Gossypium hirsutum HOM05D004751 ORTHO05D005819 0.0e+00 1723.0 1292 70.0
FAN01G0060 Fragaria x ananassa HOM05D004751 ORTHO05D005819 0.0e+00 1716.8 1283 70.8
CANSAT56G3494 Cannabis sativa HOM05D004751 ORTHO05D005819 0.0e+00 1716.4 1287 70.5
TWI34G0109 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 0.0e+00 1705.6 1282 70.3
Potri.006G153100 Populus trichocarpa HOM05D004751 ORTHO05D005819 0.0e+00 1704.9 1283 71.7
ClCG03G016070 Citrullus lanatus HOM05D004751 ORTHO05D005819 0.0e+00 1701.4 1287 70.2
CsaV3_1G039890 Cucumis sativus L. HOM05D004751 ORTHO05D005819 0.0e+00 1696.4 1279 70.1
Sabra06G0121300 Salix brachista HOM05D004751 ORTHO05D005819 0.0e+00 1691.8 1285 70.4
CSS0026223 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 0.0e+00 1688.7 1282 68.9
CSS0000434 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 0.0e+00 1687.9 1282 68.9
MELO3C015420.2 Cucumis melo HOM05D004751 ORTHO05D005819 0.0e+00 1686.4 1275 69.9
TAR626G1784 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1677.9 1290 69.3
TAR639G0003 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1677.9 1290 69.3
Sed0000923 Sechium edule HOM05D004751 ORTHO05D005819 0.0e+00 1669.4 1281 69.3
Actinidia17515 Actinidia chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1668.7 1281 68.1
Rhsim05G0038900 Rhododendron simsii HOM05D004751 ORTHO05D005819 0.0e+00 1666.7 1291 68.6
TWI32G0016 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 0.0e+00 1661.4 1276 69.4
Eucgr.C03719 Eucalyptus grandis HOM05D004751 ORTHO05D005819 0.0e+00 1655.2 1273 68.4
COL.COLO4_34728 Corchorus olitorius HOM05D004751 ORTHO05D005819 0.0e+00 1652.1 1289 69.0
vmacro10847 Vaccinium macrocarpon HOM05D004751 ORTHO05D005819 0.0e+00 1650.2 1280 69.1
TAR383G0360 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1629.4 1296 67.1
DCAR_028653 Daucus carota HOM05D004751 ORTHO05D005819 0.0e+00 1621.3 1282 68.1
EL10Ac8g18369 Beta vulgaris HOM05D004751 ORTHO05D005819 0.0e+00 1610.9 1290 66.4
Hma1.2p1_0012F.1_g007400 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 0.0e+00 1597.8 1283 68.0
Cc06_g10590 Coffea canephora HOM05D004751 ORTHO05D005819 0.0e+00 1581.2 1289 66.5
Lj7C667T4 Lonicera japonica HOM05D004751 ORTHO05D005819 0.0e+00 1570.1 1284 66.8
Sopen04g006260 Solanum pennellii HOM05D004751 ORTHO05D005819 0.0e+00 1570.1 1286 65.9
Migut.K00548 Erythranthe guttata HOM05D004751 ORTHO05D005819 0.0e+00 1565.1 1284 65.0
PGSC0003DMG400023589 Solanum tuberosum HOM05D004751 ORTHO05D005819 0.0e+00 1563.9 1286 65.7
AUR62021393 Chenopodium quinoa HOM05D004751 ORTHO05D005819 0.0e+00 1561.2 1288 65.1
AUR62010880 Chenopodium quinoa HOM05D004751 ORTHO05D005819 0.0e+00 1557.7 1289 65.1
SalBow1G2004 Salvia bowleyana HOM05D004751 ORTHO05D005819 0.0e+00 1557.0 1282 64.7
PGR102G2506 Punica granatum HOM05D004751 ORTHO05D005819 0.0e+00 1556.6 1272 66.2
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 0.0e+00 1553.5 1281 65.5
CAN.G787.12 Capsicum annuum HOM05D004751 ORTHO05D005819 0.0e+00 1545.8 1284 65.0
SGA_v2.0_scaffold19G08722 Striga asiatica HOM05D004751 ORTHO05D005819 0.0e+00 1545.4 1281 64.6
Peaxi162Scf01157g00011 Petunia axillaris HOM05D004751 ORTHO05D005819 0.0e+00 1541.2 1286 65.3
PSO210G2464 Papaver somniferum HOM05D004751 ORTHO05D005819 0.0e+00 1540.8 1287 65.2
THA.LOC104814595 Tarenaya hassleriana HOM05D004751 ORTHO05D005819 0.0e+00 1538.1 1286 64.5
AT4G29380 Arabidopsis thaliana HOM05D004751 ORTHO05D005819 0.0e+00 1537.7 1268 64.7
AL7G23020 Arabidopsis lyrata HOM05D004751 ORTHO05D005819 0.0e+00 1530.8 1268 64.4
PSO210G3406 Papaver somniferum HOM05D004751 ORTHO05D005819 0.0e+00 1530.8 1287 64.7
Carub.0007s1117 Capsella rubella HOM05D004751 ORTHO05D005819 0.0e+00 1527.3 1268 64.5
Thhalv10024212m.g Eutrema salsugineum HOM05D004751 ORTHO05D005819 0.0e+00 1524.2 1267 64.3
Sp7g27250 Schrenkiella parvula HOM05D004751 ORTHO05D005819 0.0e+00 1518.8 1276 63.1
Aa31LG2G21070 Aethionema arabicum HOM05D004751 ORTHO05D005819 0.0e+00 1513.4 1295 63.6
MBI15_g07764_MAGBIO Magnolia biondii HOM05D004751 ORTHO05D005819 0.0e+00 1513.0 1295 63.8
Aqoxy7G03607 Aquilegia oxysepala HOM05D004751 ORTHO05D005819 0.0e+00 1511.5 1291 63.4
C01p10120 Brassica napus HOM05D004751 ORTHO05D005819 0.0e+00 1499.2 1264 63.7
BolC1t00970H Brassica oleracea HOM05D004751 ORTHO05D005819 0.0e+00 1496.5 1264 63.7
Solyc04g012170.4 Solanum lycopersicum HOM05D004751 ORTHO05D005819 0.0e+00 1494.2 1286 63.5
GSVIVG01015287001 Vitis vinifera HOM05D004751 ORTHO05D005819 0.0e+00 1487.2 1277 65.0
A01p08650 Brassica napus HOM05D004751 ORTHO05D005819 0.0e+00 1485.3 1272 62.8
BraA01t00815Z Brassica rapa HOM05D004751 ORTHO05D005819 0.0e+00 1484.2 1272 62.7
MSTRG.26388 Avicennia marina HOM05D004751 ORTHO05D005819 0.0e+00 1482.6 1278 62.3
Lsat_1_v5_gn_7_39580 Lactuca sativa HOM05D004751 ORTHO05D005819 0.0e+00 1479.9 1282 63.1
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 0.0e+00 1476.5 1272 63.8
Hund26286 Selenicereus undatus HOM05D004751 ORTHO05D005819 0.0e+00 1454.5 1225 63.9
HanXRQChr03g0061061 Helianthus annuus HOM05D004751 ORTHO05D005819 0.0e+00 1419.8 1270 62.1
Oeu021455.1 Olea europaea HOM05D004751 ORTHO05D005819 0.0e+00 1413.7 1212 63.2
Sc08g0008060 Simmondsia chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1360.5 1194 62.7
Cpa.g.sc78.25 Carica papaya HOM05D004751 ORTHO05D005819 0.0e+00 1327.8 956 73.2
BcaC09g51723 Brassica carinata HOM05D004751 ORTHO05D005819 0.0e+00 1322.0 1260 58.7
Oeu018580.2 Olea europaea HOM05D004751 ORTHO05D005819 0.0e+00 1321.6 1268 58.4
unitig_8.g4485 Utricularia gibba HOM05D004751 ORTHO05D005819 0.0e+00 1316.6 1276 57.6
CARHR237190 Cardamine hirsuta HOM05D004751 ORTHO05D005819 0.0e+00 1245.0 1095 62.8
ATR0730G043 Amborella trichopoda HOM05D004751 ORTHO05D005819 0.0e+00 1224.9 1248 55.8
Zm00001eb257890 Zea mays HOM05D004751 ORTHO05D005819 4.4e-306 1055.0 1295 48.6
SHI02649 Sapria himalayana HOM05D004751 ORTHO05D005819 3.4e-282 975.7 1043 54.2
CDE04G1922 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 8.1e-268 927.9 836 60.0
Hund09091 Selenicereus undatus HOM05D004751 ORTHO05D005819 2.2e-265 919.8 1188 46.9
SEGI_30648 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 2.9e-257 892.9 1284 45.2
Nitab4.5_0001242g0100 Nicotiana tabacum HOM05D004751 ORTHO05D005819 4.1e-256 889.0 1278 42.5
Zm00001eb192340 Zea mays HOM05D004751 ORTHO05D005819 7.1e-248 861.7 1106 47.3
Pp3c9_3860 Physcomitrium patens HOM05D004751 ORTHO05D005819 1.6e-239 833.9 1517 39.7
Pp3c15_10000 Physcomitrium patens HOM05D004751 ORTHO05D005819 1.0e-238 831.2 1175 45.5
Nitab4.5_0004673g0040 Nicotiana tabacum HOM05D004751 ORTHO05D005819 2.1e-223 780.4 635 67.7
Mapoly0002s0158 Marchantia polymorpha HOM05D004751 ORTHO05D005819 1.3e-222 777.7 1370 39.1
AagrBONN_evm.TU.Sc2ySwM_228.4976 Anthoceros agrestis HOM05D004751 ORTHO05D005819 1.6e-215 754.2 1164 43.8
Dinv36677 Davidia involucrata HOM05D004751 ORTHO05D005819 7.9e-215 751.9 542 69.9
SMO347G0104 Selaginella moellendorffii HOM05D004751 ORTHO05D005819 1.6e-207 727.6 1268 40.3
Ca_25584_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 5.5e-200 702.6 447 81.2
Ca_25581_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 8.9e-158 562.4 589 53.7
Dinv36676 Davidia involucrata HOM05D004751 ORTHO05D005819 3.4e-157 560.5 435 74.7
Os02g0796700 Oryza sativa ssp. japonica HOM05D004751 ORTHO05D005819 9.2e-155 552.4 497 54.7
RcHm_v2.0_Chr1g0332501 Rosa chinensis HOM05D004751 ORTHO05D005819 1.1e-147 528.9 616 51.6
Nitab4.5_0015727g0010 Nicotiana tabacum HOM05D004751 ORTHO05D005819 1.3e-132 478.8 294 76.5
CBR_g47981 Chara braunii HOM05D004751 ORTHO05D005819 4.8e-127 460.3 1525 29.2
CiPaw.03G223300 Carya illinoinensis HOM05D004751 ORTHO05D005819 1.0e-97 362.8 213 81.2
Lsat_1_v5_gn_0_39700 Lactuca sativa HOM05D004751 ORTHO05D005819 7.4e-96 356.7 269 66.2
Hma1.2p1_0386F.1_g141720 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 1.8e-94 352.1 241 76.3
PRCOL_00004168 Prasinoderma coloniale HOM05D004751 ORTHO05D005819 7.0e-86 323.6 1179 27.7
RcHm_v2.0_Chr1g0332481 Rosa chinensis HOM05D004751 ORTHO05D005819 7.2e-83 313.5 195 75.4
Cre06.g290500 Chlamydomonas reinhardtii HOM05D004751 ORTHO05D005819 6.5e-76 290.4 1224 25.8
CDE04G0916 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 2.0e-64 252.3 313 47.3
RcHm_v2.0_Chr1g0332491 Rosa chinensis HOM05D004751 ORTHO05D005819 4.4e-32 144.8 110 64.5
Dinv36675 Davidia involucrata HOM05D004751 ORTHO05D005819 4.7e-26 124.8 119 52.9
PSO832G2682 Papaver somniferum HOM05D004751 ORTHO05D005819 4.0e-25 121.7 419 29.8
SHI02652 Sapria himalayana HOM05D004751 ORTHO05D005819 2.4e-22 112.5 94 56.4
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 6.6e-20 104.4 77 72.7
Ca_19974_v3 Cicer arietinum L. HOM05D004751 ORTHO05D000385 2.5e-19 102.4 95 60.0
ATR0661G544 Amborella trichopoda HOM05D004751 ORTHO05D005819 6.9e-17 94.4 59 67.8
RcHm_v2.0_Chr1g0332471 Rosa chinensis HOM05D004751 ORTHO05D050748 6.9e-17 94.4 56 83.9
FAN03G2869 Fragaria x ananassa HOM05D004751 ORTHO05D005819 1.4e-14 86.7 52 71.2
SHI02653 Sapria himalayana HOM05D004751 ORTHO05D050748 1.2e-13 83.6 64 62.5
SHI02648 Sapria himalayana HOM05D004751 ORTHO05D005819 2.1e-13 82.8 66 56.1
Gorai.010G078000 Gossypium raimondii HOM05D039740 ORTHO05D047670 4.9e-07 61.6 63 52.4
Gohir.D06G066500 Gossypium hirsutum HOM05D039740 ORTHO05D047670 1.4e-06 60.1 62 51.6


User provided reference genes

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