Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 0.0e+00 1341.6 686 100.0
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 0.0e+00 1322.8 688 98.4
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 2.3e-261 905.6 691 72.8
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 3.7e-251 871.7 689 71.0
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 4.1e-250 868.2 691 70.2
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 2.9e-243 845.5 694 68.6
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 2.4e-242 842.4 713 65.9
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 1.2e-236 823.5 711 64.7
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 7.6e-228 794.3 691 64.1
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 7.1e-226 787.7 698 63.3
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 1.3e-224 783.5 716 61.6
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 5.1e-224 781.6 695 63.9
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.1e-221 773.9 690 62.3
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.4e-218 762.7 712 60.7
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.0e-203 714.1 687 60.0
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 2.3e-200 703.0 687 59.4
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 1.8e-192 676.8 620 61.9
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 8.2e-190 667.9 712 54.5
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.8e-189 666.8 701 55.3
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 8.5e-187 657.9 706 55.1
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 3.0e-184 649.4 772 53.6
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.4e-183 645.6 705 54.0
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 4.8e-182 642.1 713 53.0
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 2.4e-181 639.8 710 55.8
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 2.0e-180 636.7 708 53.2
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.0e-179 634.4 688 54.2
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 1.7e-179 633.6 727 51.9
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.6e-177 627.1 723 53.0
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 2.2e-174 616.7 704 52.8
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.7e-174 615.9 701 52.8
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 3.7e-174 615.9 710 52.8
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.1e-173 614.4 704 53.1
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 7.0e-173 611.7 710 52.8
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 3.8e-171 605.9 641 55.1
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 5.0e-171 605.5 706 52.7
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 1.5e-170 604.0 715 52.0
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 1.6e-169 600.5 715 50.3
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 5.2e-168 595.5 708 51.3
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 3.3e-167 592.8 713 51.6
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 9.7e-167 591.3 692 51.0
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.7e-166 590.5 696 51.9
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.7e-166 590.5 711 51.3
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 4.8e-166 589.0 708 52.5
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.8e-165 587.0 711 50.9
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 5.3e-165 585.5 703 50.6
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.2e-164 584.3 707 52.6
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.0e-164 583.6 697 51.5
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 4.5e-164 582.4 717 49.7
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.0e-163 581.3 738 49.3
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.1e-162 577.8 689 51.8
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.5e-162 576.6 721 50.5
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 3.6e-161 572.8 695 50.5
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 4.7e-161 572.4 723 51.0
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.0e-160 571.2 687 51.7
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.4e-160 570.9 704 49.7
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 9.8e-159 564.7 678 51.6
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.7e-156 556.6 616 54.9
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 2.7e-156 556.6 749 48.9
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 2.9e-155 553.1 720 48.1
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 2.9e-155 553.1 646 52.6
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 5.0e-155 552.4 764 47.6
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.5e-154 550.8 710 49.4
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 5.5e-154 548.9 719 49.1
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.0e-152 543.1 704 51.4
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 5.2e-152 542.3 711 50.5
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.2e-151 541.2 704 51.1
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.2e-150 537.0 716 50.0
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 4.9e-150 535.8 826 44.7
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.3e-150 535.0 707 50.1
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 2.4e-149 533.5 633 51.2
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 5.9e-148 528.9 696 47.6
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 5.6e-146 522.3 726 47.1
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.6e-145 520.8 699 45.8
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 5.4e-141 505.8 630 51.6
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 5.0e-139 499.2 723 45.2
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 8.6e-139 498.4 723 46.6
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.6e-139 498.4 558 55.2
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 8.6e-139 498.4 812 42.1
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.3e-136 490.3 683 47.6
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.0e-136 489.6 778 43.2
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.4e-135 486.5 694 43.9
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 9.8e-135 485.0 714 44.3
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.3e-134 484.6 737 43.6
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.2e-133 479.9 729 43.6
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.0e-133 478.8 732 44.7
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 7.8e-132 475.3 719 43.7
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.9e-130 470.7 697 44.2
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.7e-129 466.1 706 43.3
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 1.5e-127 461.1 711 42.3
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.5e-127 461.1 718 44.8
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 4.4e-127 459.5 704 43.9
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 7.5e-127 458.8 697 44.2
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 3.7e-126 456.4 699 44.6
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 3.2e-125 453.4 710 43.1
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.1e-124 450.7 698 44.3
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 3.5e-124 449.9 700 42.9
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.6e-124 449.5 731 42.3
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 1.2e-121 441.4 525 51.4
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.2e-121 441.4 712 43.0
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.1e-121 440.7 721 42.0
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 1.1e-117 428.3 708 40.8
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 6.0e-116 422.5 780 39.9
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.3e-114 416.4 729 40.3
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 8.1e-113 412.1 482 54.4
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.1e-112 411.8 633 42.8
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.4e-112 411.4 667 42.3
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 4.0e-112 409.8 679 41.5
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 6.4e-110 402.5 678 40.6
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 6.4e-110 402.5 777 37.6
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 6.4e-110 402.5 691 42.4
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 4.2e-109 399.8 633 40.4
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 5.4e-109 399.4 675 40.3
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 6.6e-107 392.5 688 39.1
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 1.1e-106 391.7 646 42.0
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 3.3e-106 390.2 678 40.0
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 3.3e-106 390.2 722 38.1
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.3e-105 388.3 708 41.0
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 6.2e-105 386.0 712 38.5
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 8.1e-105 385.6 672 39.0
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 1.8e-104 384.4 675 40.0
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 2.0e-103 380.9 671 39.6
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 2.9e-102 377.1 677 38.3
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 2.9e-102 377.1 720 39.2
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 6.4e-102 375.9 673 39.7
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 8.4e-102 375.6 675 38.5
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 2.4e-101 374.0 680 39.4
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.4e-101 374.0 705 38.6
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 4.6e-100 369.8 304 61.8
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.3e-99 368.2 717 40.2
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 1.8e-99 367.9 668 38.5
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.8e-99 367.9 671 38.7
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.8e-99 367.9 694 36.9
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 3.9e-99 366.7 871 34.2
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.5e-98 364.0 674 38.6
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 5.5e-93 346.3 630 38.4
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.2e-92 345.1 672 36.9
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.6e-92 344.7 577 42.5
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.3e-91 341.7 688 36.6
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 1.9e-90 337.8 300 57.7
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.0e-83 315.5 276 64.1
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 2.3e-83 314.3 699 37.1
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 1.1e-82 312.0 573 39.1
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 9.7e-82 308.9 389 47.3
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 4.8e-81 306.6 570 38.4
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.1e-80 305.4 304 54.3
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 6.1e-76 289.7 278 55.8
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 1.8e-75 288.1 614 37.1
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.7e-73 281.6 352 46.3
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 8.2e-73 279.3 338 49.7
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 5.0e-70 270.0 301 50.5
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 4.2e-69 266.9 442 44.3
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.7e-65 255.0 310 47.1
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.2e-65 254.6 232 56.5
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 4.5e-63 246.9 231 54.5
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 2.3e-51 208.0 430 36.3
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.5e-50 205.3 139 70.5
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.5e-45 188.7 144 69.4
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 7.5e-42 176.4 207 47.3
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.2e-39 169.1 188 55.3
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 1.3e-38 165.6 371 36.7
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 1.6e-36 158.7 155 62.6
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 2.1e-36 158.3 249 39.0
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 5.9e-31 140.2 207 44.0
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 4.3e-29 134.0 316 32.0
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.5e-26 125.6 448 30.8
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 4.4e-26 124.0 98 66.3
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 9.8e-26 122.9 731 27.6
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 7.0e-16 90.1 458 27.9
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 8.6e-14 83.2 67 65.7
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.5e-13 81.6 99 46.5
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.3e-13 81.3 67 55.2
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.3e-13 80.9 105 44.8
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.3e-11 75.1 55 67.3
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 9.9e-10 69.7 61 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 3.5e-07 61.2 156 32.7
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.9e-06 57.8 115 34.8


User provided reference genes

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