Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 9.8e-172 606.7 300 100.0
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 2.0e-47 193.7 215 51.2
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 7.5e-47 191.8 191 53.9
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 3.7e-46 189.5 154 57.8
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 8.3e-46 188.3 262 43.9
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 1.4e-45 187.6 247 44.9
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 1.2e-44 184.5 208 48.1
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.2e-44 184.5 222 48.6
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 2.0e-44 183.7 249 44.6
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 2.0e-44 183.7 235 49.8
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 3.5e-44 183.0 212 50.0
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 1.7e-43 180.6 280 42.1
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 3.0e-43 179.9 243 44.0
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 3.0e-43 179.9 237 46.4
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 3.9e-43 179.5 124 65.3
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 5.0e-43 179.1 252 43.7
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 5.0e-43 179.1 121 71.1
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 1.9e-42 177.2 209 46.9
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.9e-42 177.2 285 41.8
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 2.5e-42 176.8 122 66.4
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 3.3e-42 176.4 156 57.1
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 4.3e-42 176.0 253 41.1
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 4.3e-42 176.0 222 44.6
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 5.6e-42 175.6 129 60.5
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 5.6e-42 175.6 235 44.7
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 9.5e-42 174.9 243 41.2
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 9.5e-42 174.9 248 43.5
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 1.2e-41 174.5 121 64.5
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.6e-41 174.1 226 45.1
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 1.6e-41 174.1 227 48.0
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 1.6e-41 174.1 121 66.1
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 2.1e-41 173.7 226 44.7
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 2.8e-41 173.3 236 42.4
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 3.6e-41 172.9 255 41.6
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 4.7e-41 172.6 149 58.4
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 4.7e-41 172.6 230 46.1
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 6.2e-41 172.2 226 44.2
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 1.1e-40 171.4 122 66.4
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 1.1e-40 171.4 127 60.6
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 1.4e-40 171.0 220 45.5
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 1.8e-40 170.6 149 57.7
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 1.8e-40 170.6 228 44.3
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 3.1e-40 169.9 122 63.9
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 4.0e-40 169.5 220 45.0
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 4.0e-40 169.5 217 47.9
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 6.8e-40 168.7 254 42.5
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 6.8e-40 168.7 165 53.3
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 8.9e-40 168.3 120 66.7
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 1.5e-39 167.5 161 51.6
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 1.5e-39 167.5 253 42.7
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 1.5e-39 167.5 120 66.7
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.5e-39 167.5 120 66.7
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 2.6e-39 166.8 127 61.4
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 2.6e-39 166.8 220 45.0
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 4.4e-39 166.0 120 65.8
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 5.8e-39 165.6 249 42.6
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.8e-39 165.6 120 65.8
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 9.8e-39 164.9 244 38.5
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 9.8e-39 164.9 124 59.7
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 1.3e-38 164.5 225 42.7
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 1.7e-38 164.1 250 41.6
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 1.7e-38 164.1 250 41.6
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 1.7e-38 164.1 250 41.6
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 3.7e-38 162.9 161 50.9
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 1.1e-37 161.4 128 58.6
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 1.1e-37 161.4 266 38.7
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 1.4e-37 161.0 144 53.5
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 1.4e-37 161.0 152 53.9
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 1.9e-37 160.6 262 38.5
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 5.4e-37 159.1 227 43.2
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 7.1e-37 158.7 208 47.1
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 1.2e-36 157.9 235 40.0
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 5.6e-34 149.1 211 44.1
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 1.4e-32 144.4 106 63.2
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 3.1e-32 143.3 121 53.7
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 4.0e-32 142.9 213 39.9
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 5.2e-32 142.5 108 63.9
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 6.8e-32 142.1 212 39.6
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 8.9e-32 141.7 123 53.7
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 1.9e-29 134.0 106 59.4
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 6.0e-28 129.0 191 39.8
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 6.0e-28 129.0 125 46.4
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 1.0e-27 128.3 226 35.8
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 3.0e-27 126.7 235 37.0
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 3.9e-27 126.3 115 53.0
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 6.6e-27 125.6 165 42.4
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 1.6e-25 120.9 154 42.9
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 6.2e-25 119.0 226 35.0
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 3.4e-23 113.2 82 65.9
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 2.9e-22 110.2 100 52.0
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.2e-20 104.8 106 48.1
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 4.6e-20 102.8 119 42.0
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 2.3e-19 100.5 112 47.3
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 3.0e-19 100.1 220 32.3
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 6.7e-11 72.4 45 73.3
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.1e-10 71.6 45 71.1
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 2.4e-08 63.9 37 67.6
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 8.4e-06 55.5 144 33.3


User provided reference genes

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