Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TRRB3R Arachis hypogaea HOM05D002211 ORTHO05D002206 2.4e-69 265.8 175 100.0
arahy.Tifrunner.gnm1.ann1.ML5U0X Arachis hypogaea HOM05D002211 ORTHO05D002206 3.8e-67 258.5 177 89.3
Ca_09451_v3 Cicer arietinum L. HOM05D002211 ORTHO05D002206 3.9e-35 152.1 185 52.4
Phvul.006G108100 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 2.5e-34 149.4 184 53.8
VMungo0540G2450 Vigna mungo HOM05D002211 ORTHO05D002206 2.5e-34 149.4 184 52.7
Glyma.19G250900 Glycine max HOM05D002211 ORTHO05D002206 2.8e-33 146.0 183 56.3
TPR.G4687 Trifolium pratense HOM05D002211 ORTHO05D002206 2.8e-33 146.0 178 51.1
Psat0s3038g0080 Pisum sativum HOM05D002211 ORTHO05D002206 1.6e-28 130.2 186 48.9
Lalb_Chr04g0261851 Lupinus albus HOM05D002211 ORTHO05D002206 2.7e-28 129.4 175 48.6
Medtr7g116610 Medicago truncatula HOM05D002211 ORTHO05D002206 1.0e-27 127.5 173 49.7
Glyma.03G253400 Glycine max HOM05D002211 ORTHO05D002206 8.6e-27 124.4 166 52.4
Lj1g0002409 Lotus japonicus HOM05D002211 ORTHO05D002206 3.3e-26 122.5 167 53.9
Psat0s3509g0040 Pisum sativum HOM05D002211 ORTHO05D002206 9.5e-26 120.9 187 46.5
TWI60G0660 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 1.8e-24 116.7 193 44.0
Haze_04489 Corylus avellana HOM05D002211 ORTHO05D002206 2.3e-24 116.3 171 56.1
Thecc.05G260900 Theobroma cacao HOM05D002211 ORTHO05D002206 3.2e-21 105.9 183 42.1
CANSAT54G2545 Cannabis sativa HOM05D002211 ORTHO05D002206 1.2e-20 104.0 178 43.8
CiPaw.07G075600 Carya illinoinensis HOM05D002211 ORTHO05D002206 1.6e-20 103.6 174 42.0
MELO3C008671.2 Cucumis melo HOM05D002211 ORTHO05D002206 2.1e-20 103.2 170 43.5
CsaV3_2G010180 Cucumis sativus L. HOM05D002211 ORTHO05D002206 2.7e-20 102.8 168 44.0
Cpa.g.sc51.66 Carica papaya HOM05D002211 ORTHO05D002206 3.5e-20 102.4 178 43.3
Duzib177G1183 Durio zibethinus HOM05D002211 ORTHO05D002206 1.3e-19 100.5 188 39.9
Manes.08G147100 Manihot esculenta HOM05D002211 ORTHO05D002206 3.0e-19 99.4 168 42.3
Ciclev10022368m.g Citrus clementina HOM05D002211 ORTHO05D002206 1.5e-18 97.1 195 40.0
COL.COLO4_20545 Corchorus olitorius HOM05D002211 ORTHO05D002206 2.5e-18 96.3 186 41.4
FvH4_6g01210 Fragaria vesca HOM05D002211 ORTHO05D002206 4.3e-18 95.5 180 41.7
FAN05G1779 Fragaria x ananassa HOM05D002211 ORTHO05D002206 5.6e-18 95.1 180 41.7
FAN05G2499 Fragaria x ananassa HOM05D002211 ORTHO05D002206 5.6e-18 95.1 180 41.7
GSVIVG01026373001 Vitis vinifera HOM05D002211 ORTHO05D002206 7.3e-18 94.7 172 40.1
Duzib106G0223 Durio zibethinus HOM05D002211 ORTHO05D002206 1.6e-17 93.6 195 36.9
Gohir.A11G241500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-17 93.6 194 38.7
Gohir.D11G250800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-17 93.6 194 40.2
EL10Ac4g09798 Beta vulgaris HOM05D002211 ORTHO05D002206 2.1e-17 93.2 181 38.7
Eucgr.H04158 Eucalyptus grandis HOM05D002211 ORTHO05D002206 2.1e-17 93.2 163 39.9
Lalb_Chr02g0149321 Lupinus albus HOM05D002211 ORTHO05D002206 2.1e-17 93.2 183 38.8
MD12G1253400 Malus domestica HOM05D002211 ORTHO05D002206 2.8e-17 92.8 192 42.2
Potri.013G052600 Populus trichocarpa HOM05D002211 ORTHO05D002206 2.8e-17 92.8 180 41.7
TWI32G0781 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 3.6e-17 92.4 195 38.5
Duzib128G1915 Durio zibethinus HOM05D002211 ORTHO05D002206 4.7e-17 92.0 189 39.7
Psat3g005480 Pisum sativum HOM05D002211 ORTHO05D002206 6.2e-17 91.7 167 44.3
Potri.019G029600 Populus trichocarpa HOM05D002211 ORTHO05D002206 6.2e-17 91.7 193 37.3
PGR142G0339 Punica granatum HOM05D002211 ORTHO05D002206 6.2e-17 91.7 184 37.0
Prupe.6G355600 Prunus persica HOM05D002211 ORTHO05D002206 8.1e-17 91.3 191 39.3
MD04G1235700 Malus domestica HOM05D002211 ORTHO05D002206 1.4e-16 90.5 192 44.3
ClCG11G010190 Citrullus lanatus HOM05D002211 ORTHO05D002206 1.8e-16 90.1 151 41.7
RcHm_v2.0_Chr3g0448791 Rosa chinensis HOM05D002211 ORTHO05D002206 4.0e-16 89.0 182 41.8
Dinv10852 Davidia involucrata HOM05D002211 ORTHO05D002206 5.2e-16 88.6 193 37.8
Manes.09G144900 Manihot esculenta HOM05D002211 ORTHO05D002206 1.2e-15 87.4 177 41.8
Oeu001241.1 Olea europaea HOM05D002211 ORTHO05D002206 2.0e-15 86.7 172 40.7
Nn1g08275 Nelumbo nucifera HOM05D002211 ORTHO05D002206 7.6e-15 84.7 175 36.6
Psat3g005600 Pisum sativum HOM05D002211 ORTHO05D002206 1.3e-14 84.0 167 40.7
Sed0010531 Sechium edule HOM05D002211 ORTHO05D002206 3.7e-14 82.4 151 40.4
FAN02G1834 Fragaria x ananassa HOM05D002211 ORTHO05D002206 6.4e-14 81.6 211 35.5
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.1e-13 80.9 168 39.9
FAN05G1484 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.4e-13 80.5 171 38.6
FvH4_6g01200 Fragaria vesca HOM05D001040 ORTHO05D002795 1.9e-13 80.1 163 38.0
Nitab4.5_0004201g0020 Nicotiana tabacum HOM05D002211 ORTHO05D002206 3.2e-13 79.3 170 35.3
Psat3g005800 Pisum sativum HOM05D002211 ORTHO05D002206 4.1e-13 79.0 171 45.6
Phvul.L001850 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 5.4e-13 78.6 170 33.5
Atru.chr2.1234 Acer truncatum HOM05D002211 ORTHO05D002206 9.2e-13 77.8 185 34.1
Gorai.007G268900 Gossypium raimondii HOM05D002211 ORTHO05D002206 9.2e-13 77.8 180 37.8
Hund07149 Selenicereus undatus HOM05D002211 ORTHO05D002206 2.7e-12 76.3 201 39.3
MSTRG.9225 Avicennia marina HOM05D002211 ORTHO05D002206 4.6e-12 75.5 193 32.1
Eucgr.B02173 Eucalyptus grandis HOM05D002211 ORTHO05D002206 6.0e-12 75.1 184 33.7
QL01p047517 Quercus lobata HOM05D002211 ORTHO05D002206 6.0e-12 75.1 175 47.4
Glyma.10G169100 Glycine max HOM05D002211 ORTHO05D002206 7.8e-12 74.7 71 57.7
Sabra13G0047200 Salix brachista HOM05D002211 ORTHO05D002206 7.8e-12 74.7 168 36.3
Peaxi162Scf00071g00139 Petunia axillaris HOM05D002211 ORTHO05D002206 1.0e-11 74.3 169 33.1
MBI07_g44687_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 2.3e-11 73.2 173 34.7
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 5.1e-11 72.0 170 33.5
Migut.F02065 Erythranthe guttata HOM05D002211 ORTHO05D002206 5.1e-11 72.0 188 33.5
Actinidia34770 Actinidia chinensis HOM05D002211 ORTHO05D002206 6.6e-11 71.6 190 33.2
Sabra19G0036300 Salix brachista HOM05D002211 ORTHO05D002206 6.6e-11 71.6 174 33.9
Sabra19G0039400 Salix brachista HOM05D002211 ORTHO05D002206 6.6e-11 71.6 174 33.9
TAR365G0725 Trochodendron aralioides HOM05D002211 ORTHO05D002206 8.6e-11 71.2 162 37.7
COL.COLO4_38590 Corchorus olitorius HOM05D002211 ORTHO05D002206 1.1e-10 70.9 170 32.9
Nn5g27522 Nelumbo nucifera HOM05D002211 ORTHO05D002206 1.1e-10 70.9 179 35.8
Glyma.20G220500 Glycine max HOM05D002211 ORTHO05D002206 2.5e-10 69.7 70 57.1
TAR365G1226 Trochodendron aralioides HOM05D002211 ORTHO05D002206 3.3e-10 69.3 141 39.0
Gohir.A11G142300 Gossypium hirsutum HOM05D002211 ORTHO05D002206 4.3e-10 68.9 175 33.1
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 4.3e-10 68.9 170 32.4
FvH4_2g17840 Fragaria vesca HOM05D002211 ORTHO05D002206 7.3e-10 68.2 174 33.3
FAN24G0249 Fragaria x ananassa HOM05D002211 ORTHO05D002206 7.3e-10 68.2 174 33.3
Ciclev10017076m.g Citrus clementina HOM05D002211 ORTHO05D002206 9.6e-10 67.8 167 35.3
SalBow1G6037 Salvia bowleyana HOM05D002211 ORTHO05D002206 9.6e-10 67.8 172 32.0
Gorai.007G159300 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.2e-09 67.4 175 32.6
Gorai.001G228600 Gossypium raimondii HOM05D002211 ORTHO05D002206 2.1e-09 66.6 177 32.2
RcHm_v2.0_Chr6g0282871 Rosa chinensis HOM05D002211 ORTHO05D002206 2.1e-09 66.6 175 32.0
Gohir.D11G148600 Gossypium hirsutum HOM05D002211 ORTHO05D002206 2.8e-09 66.2 175 32.6
Gohir.A07G196800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.6e-09 65.9 177 32.8
Gohir.D07G203200 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.2e-09 65.1 177 31.6
MD10G1152300 Malus domestica HOM05D002211 ORTHO05D002206 6.2e-09 65.1 167 32.9
PSO357G0293 Papaver somniferum HOM05D002211 ORTHO05D002206 6.2e-09 65.1 197 36.0
TWI36G0467 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 6.2e-09 65.1 171 31.6
MBI07_g35241_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 1.4e-08 63.9 160 33.8
Gohir.A13G102400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.8e-08 63.5 193 31.1
THA.LOC104820745 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 2.4e-08 63.2 166 31.3
FAN09G3091 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.1e-08 62.8 218 29.8
PGSC0003DMG400004509 Solanum tuberosum HOM05D002211 ORTHO05D002206 3.1e-08 62.8 174 33.3
Rhsim09G0131800 Rhododendron simsii HOM05D002211 ORTHO05D002206 4.0e-08 62.4 163 31.9
Gorai.N003500 Gossypium raimondii HOM05D002211 ORTHO05D002206 6.8e-08 61.6 170 31.2
Aa31LG11G11290 Aethionema arabicum HOM05D002211 ORTHO05D002206 8.9e-08 61.2 60 53.3
Gohir.D07G167000 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.2e-07 60.8 169 30.2
Solyc04g050790.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 1.2e-07 60.8 174 32.2
Aqoxy5G00107 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 1.5e-07 60.5 174 33.3
Sopen04g021740 Solanum pennellii HOM05D002211 ORTHO05D002206 1.5e-07 60.5 174 31.6
MSTRG.8176 Avicennia marina HOM05D002211 ORTHO05D002206 2.0e-07 60.1 185 29.7
PSO170G3935 Papaver somniferum HOM05D002211 ORTHO05D002206 2.0e-07 60.1 191 30.9
DCAR_018626 Daucus carota HOM05D002211 ORTHO05D002206 2.6e-07 59.7 170 34.1
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 3.4e-07 59.3 179 31.8
MSTRG.17972 Avicennia marina HOM05D002211 ORTHO05D002206 3.4e-07 59.3 180 32.2
Manes.12G053700 Manihot esculenta HOM05D002211 ORTHO05D002206 3.4e-07 59.3 165 30.9
CSS0000478 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 4.4e-07 58.9 172 31.4
CANSAT01G1044 Cannabis sativa HOM05D002211 ORTHO05D002206 4.4e-07 58.9 178 29.8
Potri.002G250800 Populus trichocarpa HOM05D002211 ORTHO05D002206 4.4e-07 58.9 167 29.3
TAR633G0017 Trochodendron aralioides HOM05D002211 ORTHO05D002206 4.4e-07 58.9 155 40.6
Haze_23452 Corylus avellana HOM05D002211 ORTHO05D002206 7.6e-07 58.2 170 30.6
Oeu003632.1 Olea europaea HOM05D002211 ORTHO05D002206 7.6e-07 58.2 169 32.0
Glyma.13G008000 Glycine max HOM05D002211 ORTHO05D002206 9.9e-07 57.8 169 32.5
PSO017G2189 Papaver somniferum HOM05D002211 ORTHO05D002206 9.9e-07 57.8 61 52.5
SGA_v2.0_scaffold13G06340 Striga asiatica HOM05D002211 ORTHO05D002206 9.9e-07 57.8 181 30.4
Dinv28814 Davidia involucrata HOM05D002211 ORTHO05D002206 1.3e-06 57.4 175 30.3
FAN27G0804 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.3e-06 57.4 172 31.4
Prupe.8G190600 Prunus persica HOM05D002211 ORTHO05D002206 1.3e-06 57.4 165 32.1
Actinidia30019 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.7e-06 57.0 171 31.0
AUR62000656 Chenopodium quinoa HOM05D055820 ORTHO05D002206 1.7e-06 57.0 63 57.1
Manes.13G054300 Manihot esculenta HOM05D002211 ORTHO05D002206 1.7e-06 57.0 156 30.8
BcaB08g36688 Brassica carinata HOM05D002211 ORTHO05D002206 2.9e-06 56.2 67 49.3
A10p21210 Brassica napus HOM05D002211 ORTHO05D002206 2.9e-06 56.2 67 49.3
C09p58640 Brassica napus HOM05D002211 ORTHO05D002206 2.9e-06 56.2 67 49.3
BolC9t58706H Brassica oleracea HOM05D002211 ORTHO05D002206 2.9e-06 56.2 67 49.3
BraA10t44184Z Brassica rapa HOM05D002211 ORTHO05D002206 2.9e-06 56.2 67 49.3
vmacro10391 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 2.9e-06 56.2 178 33.1
Cc09_g03180 Coffea canephora HOM05D002211 ORTHO05D002206 3.8e-06 55.8 34 76.5
Glyma.03G089800 Glycine max HOM05D002211 ORTHO05D002206 3.8e-06 55.8 169 31.4
A02p04820 Brassica napus HOM05D002211 ORTHO05D002206 4.9e-06 55.5 78 47.4
C02p09800 Brassica napus HOM05D002211 ORTHO05D002206 4.9e-06 55.5 78 47.4
BolC2t06888H Brassica oleracea HOM05D002211 ORTHO05D002206 4.9e-06 55.5 78 47.4
QL09p046170 Quercus lobata HOM05D002211 ORTHO05D002206 4.9e-06 55.5 166 30.7
PSO675G4717 Papaver somniferum HOM05D002211 ORTHO05D002206 6.4e-06 55.1 64 53.1
Cc01_g16160 Coffea canephora HOM05D002211 ORTHO05D002206 8.4e-06 54.7 173 30.1
Oeu057848.1 Olea europaea HOM05D002211 ORTHO05D002206 8.4e-06 54.7 69 47.8
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 8.4e-06 54.7 169 30.8


User provided reference genes

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