Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 0.0e+00 1098.2 566 100.0
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 0.0e+00 1077.4 572 97.4
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 3.6e-260 901.4 561 81.3
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 8.1e-260 900.2 567 81.8
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 2.6e-258 895.2 562 80.2
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 3.2e-256 888.3 561 79.7
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 2.9e-249 865.1 557 79.9
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 2.4e-248 862.1 562 76.3
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 5.3e-243 844.3 561 74.5
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 2.1e-239 832.4 562 74.0
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 1.3e-238 829.7 564 76.4
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 9.6e-237 823.5 564 75.4
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 8.4e-233 810.4 561 73.6
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 1.4e-232 809.7 555 74.4
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 2.5e-232 808.9 564 73.8
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 4.6e-231 804.7 557 76.7
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.3e-230 803.1 553 71.2
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 3.9e-230 801.6 564 73.8
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 6.7e-230 800.8 564 71.3
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 8.7e-230 800.4 562 72.8
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 7.4e-229 797.3 553 74.9
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 1.3e-228 796.6 562 73.1
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 2.8e-228 795.4 562 71.7
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 8.2e-228 793.9 567 70.4
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.1e-227 791.6 574 70.9
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 4.1e-227 791.6 559 70.8
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 4.5e-226 788.1 524 75.0
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 6.5e-225 784.3 525 74.1
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 2.1e-223 779.2 516 78.5
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 3.5e-223 778.5 632 65.0
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 3.5e-223 778.5 632 65.0
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 3.5e-223 778.5 566 71.2
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 3.0e-222 775.4 569 68.9
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 6.7e-222 774.2 526 71.7
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 8.7e-222 773.9 562 69.0
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 1.5e-221 773.1 517 71.8
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 1.5e-221 773.1 484 77.1
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 2.5e-221 772.3 550 69.6
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 3.3e-221 771.9 559 68.7
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 2.2e-220 769.2 554 73.3
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 3.7e-220 768.5 547 70.4
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 4.8e-220 768.1 535 73.8
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 6.3e-220 767.7 565 69.7
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 8.2e-220 767.3 494 74.7
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 1.1e-219 766.9 535 73.1
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 3.1e-219 765.4 526 72.2
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 5.9e-218 761.1 529 68.4
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 4.2e-216 755.0 565 68.0
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 9.4e-216 753.8 535 68.0
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 7.9e-215 750.7 540 66.5
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 7.9e-215 750.7 567 66.7
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 1.4e-214 750.0 553 70.3
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 1.3e-212 743.4 545 67.5
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 2.2e-212 742.7 537 70.2
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 4.8e-212 741.5 569 70.7
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 6.3e-212 741.1 552 65.2
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 1.5e-210 736.5 548 65.3
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 1.0e-209 733.8 548 65.7
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.8e-209 731.9 578 67.6
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 1.1e-208 730.3 451 76.9
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 1.4e-208 729.9 569 65.9
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 1.9e-208 729.6 567 67.5
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 4.2e-208 728.4 559 68.5
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 4.2e-208 728.4 461 72.5
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 2.3e-206 722.6 560 67.0
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 3.7e-204 715.3 567 66.7
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 2.2e-201 706.1 559 63.3
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 5.0e-201 704.9 483 68.9
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 6.5e-201 704.5 429 75.5
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 1.0e-198 697.2 418 77.8
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 8.8e-198 694.1 435 74.5
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 7.5e-197 691.0 509 64.4
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 1.3e-196 690.3 500 70.0
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 2.2e-196 689.5 455 73.0
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 1.4e-195 686.8 489 67.7
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 7.0e-195 684.5 486 67.1
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 7.0e-195 684.5 661 57.2
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 9.1e-195 684.1 506 70.8
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 1.6e-194 683.3 451 72.5
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 1.6e-194 683.3 451 72.5
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 2.0e-194 682.9 560 60.7
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 4.5e-194 681.8 562 63.7
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 8.5e-193 677.6 490 68.8
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 2.5e-192 676.0 504 70.2
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 3.2e-192 675.6 572 62.2
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 5.5e-192 674.9 490 68.8
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 9.4e-192 674.1 434 73.3
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 9.4e-192 674.1 441 69.2
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 8.0e-191 671.0 435 72.9
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 3.0e-190 669.1 497 64.0
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 8.5e-185 651.0 560 58.9
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 1.6e-183 646.7 506 62.5
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 5.7e-181 638.3 571 58.8
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 2.8e-175 619.4 561 60.8
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 6.8e-166 588.2 469 60.6
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.9e-164 582.0 363 76.9
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 1.2e-159 567.4 484 56.4
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 1.2e-157 560.8 494 53.8
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.5e-157 560.5 469 56.9
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 6.4e-148 528.5 468 53.4
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 3.6e-143 512.7 571 51.1
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 3.6e-135 486.1 491 52.5
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.1e-110 403.3 252 79.8
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 5.7e-64 249.6 162 71.0
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 1.0e-52 212.2 300 41.7
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 1.1e-51 208.8 461 30.4
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 1.6e-50 204.9 141 63.1
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 7.0e-46 189.5 123 73.2
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 9.9e-40 169.1 105 70.5
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 6.0e-37 159.8 254 40.6
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 2.3e-36 157.9 127 65.4
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 1.9e-30 138.3 105 63.8
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 1.9e-30 138.3 131 57.3
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 1.6e-29 135.2 131 56.5
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.5e-27 127.9 94 61.7
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.5e-21 107.5 61 80.3
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.3e-20 104.8 94 50.0
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 1.5e-19 102.1 345 24.6
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.4e-17 95.5 336 25.3
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.4e-17 95.5 334 24.9
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 9.0e-17 92.8 337 25.5
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.2e-16 92.4 337 24.9
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 5.8e-16 90.1 192 37.0
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 8.4e-15 86.3 254 27.6
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.1e-14 85.9 337 24.3
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 1.4e-14 85.5 273 27.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 3.2e-14 84.3 319 22.6
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 2.7e-13 81.3 315 23.8
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 4.6e-13 80.5 334 24.3
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.3e-12 79.0 74 54.1
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.1e-11 75.9 259 24.3
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.1e-11 75.9 329 22.5
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.9e-11 75.1 328 26.5
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 3.3e-11 74.3 329 23.4
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.3e-11 73.9 294 24.8
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 7.4e-11 73.2 327 23.5
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.3e-10 72.4 339 23.9
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 4.8e-10 70.5 242 25.2
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.1e-09 69.3 219 25.6
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.4e-09 68.9 331 24.2
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.9e-09 66.6 247 25.1
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 2.6e-08 64.7 227 24.2
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.8e-07 60.8 71 36.6
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.8e-07 60.8 71 36.6
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 3.8e-07 60.8 71 36.6
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 4.9e-07 60.5 71 36.6
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 2.4e-06 58.2 66 50.0
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 2.4e-06 58.2 71 35.2
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 2.4e-06 58.2 71 33.8
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 4.2e-06 57.4 71 33.8
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 7.1e-06 56.6 42 59.5


User provided reference genes

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