Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TMHH4X Arachis hypogaea HOM05D002619 ORTHO05D002804 2.9e-135 485.3 263 100.0
Glyma.03G173500 Glycine max HOM05D002619 ORTHO05D002804 4.0e-44 182.6 282 46.5
Lj1g0014565 Lotus japonicus HOM05D002619 ORTHO05D002804 1.3e-39 167.5 280 42.9
Glyma.19G174400 Glycine max HOM05D002619 ORTHO05D002804 1.1e-38 164.5 279 43.0
VMungo1383G3532 Vigna mungo HOM05D002619 ORTHO05D002804 2.5e-38 163.3 275 45.1
Phvul.001G171000 Phaseolus vulgaris HOM05D002619 ORTHO05D002804 3.2e-33 146.4 275 40.0
Lalb_Chr25g0289461 Lupinus albus HOM05D002619 ORTHO05D002804 1.3e-23 114.4 280 37.5
Prupe.6G248900 Prunus persica HOM05D000001 ORTHO05D009784 1.4e-17 94.4 189 40.7
QL07p046673 Quercus lobata HOM05D002619 ORTHO05D002804 1.4e-17 94.4 200 37.5
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 5.4e-17 92.4 171 38.6
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 5.4e-17 92.4 178 38.2
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 5.4e-17 92.4 183 38.3
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 7.1e-17 92.0 173 37.6
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.6e-16 90.9 179 39.7
MD12G1136600 Malus domestica HOM05D002619 ORTHO05D002804 6.0e-16 89.0 186 37.6
Peaxi162Scf00406g00007 Petunia axillaris HOM05D002619 ORTHO05D002804 1.3e-15 87.8 183 38.3
FvH4_6g14520 Fragaria vesca HOM05D002619 ORTHO05D002804 1.8e-15 87.4 177 37.9
FAN14G3506 Fragaria x ananassa HOM05D002619 ORTHO05D002804 1.8e-15 87.4 177 37.9
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 5.1e-15 85.9 180 38.3
RcHm_v2.0_Chr3g0467601 Rosa chinensis HOM05D002619 ORTHO05D002804 8.7e-15 85.1 185 36.2
GSVIVG01025607001 Vitis vinifera HOM05D000001 ORTHO05D009784 8.7e-15 85.1 191 37.2
FAN02G3020 Fragaria x ananassa HOM05D002619 ORTHO05D002804 4.3e-14 82.8 185 35.7
Medtr7g100342 Medicago truncatula HOM05D002619 ORTHO05D002804 4.3e-14 82.8 264 31.1
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.3e-14 82.8 173 36.4
FAN05G1565 Fragaria x ananassa HOM05D002619 ORTHO05D002804 5.6e-14 82.4 180 37.8
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.3e-13 81.3 182 35.7
Hma1.2p1_0111F.1_g053170 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 1.3e-13 81.3 171 36.8
CAN.G820.11 Capsicum annuum HOM05D002619 ORTHO05D002804 2.1e-13 80.5 177 37.9
Oeu041011.1 Olea europaea HOM05D002619 ORTHO05D002804 2.8e-13 80.1 184 36.4
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 4.8e-13 79.3 182 35.7
HanXRQChr01g0009911 Helianthus annuus HOM05D002619 ORTHO05D002804 4.8e-13 79.3 191 32.5
Oeu040288.1 Olea europaea HOM05D002619 ORTHO05D002804 6.2e-13 79.0 172 35.5
MSTRG.12631 Avicennia marina HOM05D002619 ORTHO05D002804 8.1e-13 78.6 175 38.3
HanXRQChr11g0340291 Helianthus annuus HOM05D002619 ORTHO05D002804 1.4e-12 77.8 194 35.1
Sc21g0005450 Simmondsia chinensis HOM05D002619 ORTHO05D002804 1.4e-12 77.8 170 34.1
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 1.8e-12 77.4 250 30.4
Oeu062318.1 Olea europaea HOM05D002619 ORTHO05D002804 2.4e-12 77.0 188 36.7
PGR102G0064 Punica granatum HOM05D002619 ORTHO05D002804 3.1e-12 76.6 176 36.9
Potri.001G235200 Populus trichocarpa HOM05D002619 ORTHO05D002804 4.0e-12 76.3 196 34.7
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 4.0e-12 76.3 177 35.6
Thecc.09G328300 Theobroma cacao HOM05D002619 ORTHO05D002804 4.0e-12 76.3 195 34.4
Cc01_g04170 Coffea canephora HOM05D002619 ORTHO05D002804 1.5e-11 74.3 197 32.5
Gohir.A13G229100 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.5e-11 74.3 175 34.3
SalBow1G2722 Salvia bowleyana HOM05D002619 ORTHO05D002804 2.0e-11 73.9 170 37.1
Aqoxy4G03023 Aquilegia oxysepala HOM05D002619 ORTHO05D002804 2.6e-11 73.6 200 35.5
C09p52230 Brassica napus HOM05D002619 ORTHO05D002804 2.6e-11 73.6 171 36.3
SalBow3G1374 Salvia bowleyana HOM05D002619 ORTHO05D002804 2.6e-11 73.6 170 36.5
arahy.Tifrunner.gnm1.ann1.13MW22 Arachis hypogaea HOM05D002619 ORTHO05D002804 5.8e-11 72.4 179 32.4
arahy.Tifrunner.gnm1.ann1.J9PDVA Arachis hypogaea HOM05D002619 ORTHO05D002804 5.8e-11 72.4 179 32.4
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 5.8e-11 72.4 194 33.0
Nitab4.5_0000070g0090 Nicotiana tabacum HOM05D002619 ORTHO05D002804 5.8e-11 72.4 186 34.9
Ah.08g214850 Amaranthus hybridus HOM05D002619 ORTHO05D002804 7.6e-11 72.0 175 37.7
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 9.9e-11 71.6 194 34.0
GSVIVG01025039001 Vitis vinifera HOM05D002619 ORTHO05D002804 9.9e-11 71.6 171 36.3
Glyma.15G041400 Glycine max HOM05D002619 ORTHO05D002804 1.3e-10 71.2 179 34.1
Lalb_Chr24g0394271 Lupinus albus HOM05D002619 ORTHO05D002804 1.3e-10 71.2 178 30.9
Rhsim13G0087400 Rhododendron simsii HOM05D002619 ORTHO05D002804 1.3e-10 71.2 172 34.3
Nitab4.5_0011620g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.7e-10 70.9 186 33.9
TWI31G0042 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.7e-10 70.9 199 33.7
AUR62001841 Chenopodium quinoa HOM05D002619 ORTHO05D002804 2.2e-10 70.5 195 32.3
Ca_01347_v3 Cicer arietinum L. HOM05D002619 ORTHO05D002804 2.2e-10 70.5 173 34.1
Ca_27691_v3 Cicer arietinum L. HOM05D002619 ORTHO05D002804 2.2e-10 70.5 173 34.1
Gohir.A01G219450 Gossypium hirsutum HOM05D002619 ORTHO05D036095 2.9e-10 70.1 172 34.9
Peaxi162Scf00406g00012 Petunia axillaris HOM05D002619 ORTHO05D002804 2.9e-10 70.1 175 33.7
Sabra09G0018200 Salix brachista HOM05D002619 ORTHO05D002804 2.9e-10 70.1 201 32.8
EL10Ac7g15959 Beta vulgaris HOM05D002619 ORTHO05D002804 3.8e-10 69.7 182 32.4
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 4.9e-10 69.3 184 34.8
Sabra08G0006000 Salix brachista HOM05D002619 ORTHO05D002804 4.9e-10 69.3 192 33.3
CSS0018989 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 6.4e-10 68.9 177 32.2
Lalb_Chr03g0026881 Lupinus albus HOM05D002619 ORTHO05D002804 6.4e-10 68.9 176 30.1
Nn2g15083 Nelumbo nucifera HOM05D002619 ORTHO05D002804 8.4e-10 68.6 183 33.3
Eucgr.B00641 Eucalyptus grandis HOM05D002619 ORTHO05D002804 1.1e-09 68.2 185 33.0
Glyma.12G066500 Glycine max HOM05D002619 ORTHO05D002804 1.1e-09 68.2 188 33.0
RcHm_v2.0_Chr5g0062781 Rosa chinensis HOM05D002619 ORTHO05D002804 1.1e-09 68.2 200 31.5
Migut.N02660 Erythranthe guttata HOM05D002619 ORTHO05D002804 1.4e-09 67.8 177 30.5
PGSC0003DMG400015562 Solanum tuberosum HOM05D002619 ORTHO05D002804 1.4e-09 67.8 166 31.9
TPR.G34317 Trifolium pratense HOM05D002619 ORTHO05D002804 1.4e-09 67.8 174 34.5
vmacro03117 Vaccinium macrocarpon HOM05D002619 ORTHO05D002804 1.4e-09 67.8 171 31.6
CSS0041199 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 1.9e-09 67.4 195 32.3
CANSAT80G1891 Cannabis sativa HOM05D002619 ORTHO05D002804 1.9e-09 67.4 170 32.4
DCAR_015599 Daucus carota HOM05D002619 ORTHO05D002804 1.9e-09 67.4 196 33.7
Manes.11G134700 Manihot esculenta HOM05D002619 ORTHO05D002804 1.9e-09 67.4 195 32.3
PGSC0003DMG400010881 Solanum tuberosum HOM05D002619 ORTHO05D002804 1.9e-09 67.4 174 35.1
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 2.4e-09 67.0 177 35.0
HanXRQChr08g0228281 Helianthus annuus HOM05D002619 ORTHO05D002804 2.4e-09 67.0 178 33.1
Hund18942 Selenicereus undatus HOM05D002619 ORTHO05D002804 2.4e-09 67.0 193 32.1
HPP92_000712 Vanilla planifolia HOM05D002619 ORTHO05D002804 2.4e-09 67.0 170 33.5
Migut.D02134 Erythranthe guttata HOM05D002619 ORTHO05D002804 3.2e-09 66.6 174 31.0
Eucgr.J02075 Eucalyptus grandis HOM05D002619 ORTHO05D002804 3.2e-09 66.6 164 34.8
Sabra06G0200800 Salix brachista HOM05D002619 ORTHO05D002804 3.2e-09 66.6 186 32.3
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 3.2e-09 66.6 186 32.3
CiPaw.14G072600 Carya illinoinensis HOM05D002619 ORTHO05D002804 4.2e-09 66.2 188 33.0
FAN25G3511 Fragaria x ananassa HOM05D002619 ORTHO05D002804 4.2e-09 66.2 202 32.7
HPP92_000709 Vanilla planifolia HOM05D002619 ORTHO05D002804 4.2e-09 66.2 170 33.5
AUR62009629 Chenopodium quinoa HOM05D002619 ORTHO05D002804 5.5e-09 65.9 183 32.2
Lj3g0023082 Lotus japonicus HOM05D002619 ORTHO05D002804 5.5e-09 65.9 171 35.7
Potri.008G010100 Populus trichocarpa HOM05D002619 ORTHO05D002804 5.5e-09 65.9 192 31.8
TAR633G1544 Trochodendron aralioides HOM05D002619 ORTHO05D002804 5.5e-09 65.9 208 31.7
Duzib170G0200 Durio zibethinus HOM05D002619 ORTHO05D002804 7.1e-09 65.5 194 33.5
PSO339G4672 Papaver somniferum HOM05D002619 ORTHO05D002804 7.1e-09 65.5 188 32.4
Sc12g0001720 Simmondsia chinensis HOM05D002619 ORTHO05D002804 7.1e-09 65.5 170 30.6
THA.LOC104826341 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 7.1e-09 65.5 191 31.4
HPP92_012580 Vanilla planifolia HOM05D002619 ORTHO05D002804 7.1e-09 65.5 167 30.5
Actinidia07071 Actinidia chinensis HOM05D002619 ORTHO05D002804 9.3e-09 65.1 44 68.2
COL.COLO4_14874 Corchorus olitorius HOM05D002619 ORTHO05D002804 1.2e-08 64.7 182 33.0
Eucgr.B02404 Eucalyptus grandis HOM05D002619 ORTHO05D002804 1.2e-08 64.7 193 32.6
Hund05001 Selenicereus undatus HOM05D002619 ORTHO05D002804 1.2e-08 64.7 171 32.2
Dinv26273 Davidia involucrata HOM05D002619 ORTHO05D002804 1.6e-08 64.3 172 33.7
Actinidia03780 Actinidia chinensis HOM05D002619 ORTHO05D002804 2.1e-08 63.9 173 31.2
Cc02_g10710 Coffea canephora HOM05D002307 ORTHO05D002378 2.1e-08 63.9 176 29.5
BcaC04g19626 Brassica carinata HOM05D002619 ORTHO05D002804 2.7e-08 63.5 171 33.3
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 2.7e-08 63.5 177 30.5
Lj3g0007491 Lotus japonicus HOM05D002619 ORTHO05D002804 2.7e-08 63.5 183 34.4
Zm00001eb266340 Zea mays HOM05D002619 ORTHO05D002804 2.7e-08 63.5 170 33.5
Glyma.13G332900 Glycine max HOM05D002619 ORTHO05D002804 3.5e-08 63.2 184 32.1
Actinidia37246 Actinidia chinensis HOM05D002619 ORTHO05D002804 4.6e-08 62.8 185 31.4
DCAR_005304 Daucus carota HOM05D002619 ORTHO05D002804 4.6e-08 62.8 180 33.9
DCAR_015612 Daucus carota HOM05D002619 ORTHO05D002804 4.6e-08 62.8 42 71.4
Gohir.D01G208532 Gossypium hirsutum HOM05D002619 ORTHO05D036095 4.6e-08 62.8 172 34.9
Sabra18G0027500 Salix brachista HOM05D002619 ORTHO05D002804 4.6e-08 62.8 198 30.8
Potri.018G024900 Populus trichocarpa HOM05D002619 ORTHO05D002804 6.0e-08 62.4 192 31.8
TAR369G0856 Trochodendron aralioides HOM05D002619 ORTHO05D002804 6.0e-08 62.4 208 32.7
TAR623G0548 Trochodendron aralioides HOM05D002619 ORTHO05D002804 6.0e-08 62.4 208 31.2
Lj2P1052T44 Lonicera japonica HOM05D002619 ORTHO05D002804 7.9e-08 62.0 175 32.6
SGA_v2.0_scaffold134G34714 Striga asiatica HOM05D002619 ORTHO05D002804 7.9e-08 62.0 170 30.0
Haze_24026 Corylus avellana HOM05D002619 ORTHO05D002804 1.0e-07 61.6 192 30.7
Os05g0115100 Oryza sativa ssp. japonica HOM05D002619 ORTHO05D002804 1.0e-07 61.6 46 65.2
TPR.G21451 Trifolium pratense HOM05D002619 ORTHO05D002804 1.0e-07 61.6 263 28.9
MSTRG.18597 Avicennia marina HOM05D002619 ORTHO05D002804 1.3e-07 61.2 179 30.7
CDE02G0555 Ceratophyllum demersum HOM05D002619 ORTHO05D002804 1.3e-07 61.2 175 33.1
Solyc11g073180.2 Solanum lycopersicum HOM05D002619 ORTHO05D002804 1.3e-07 61.2 167 32.9
Zm00001eb355620 Zea mays HOM05D002619 ORTHO05D002804 1.3e-07 61.2 169 29.0
CSS0017604 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 2.3e-07 60.5 163 33.7
Cfa011444 Carpinus fangiana HOM05D002619 ORTHO05D002804 2.3e-07 60.5 197 30.5
Duzib168G0755 Durio zibethinus HOM05D002619 ORTHO05D002804 2.3e-07 60.5 197 31.5
Manes.04G030300 Manihot esculenta HOM05D002619 ORTHO05D002804 2.3e-07 60.5 191 30.4
Nn2g10492 Nelumbo nucifera HOM05D002619 ORTHO05D002804 2.3e-07 60.5 277 27.1
CSS0026990 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 3.0e-07 60.1 163 33.7
PSO206G0036 Papaver somniferum HOM05D002619 ORTHO05D002804 3.0e-07 60.1 186 31.7
Psat6g172320 Pisum sativum HOM05D002307 ORTHO05D002378 3.0e-07 60.1 140 34.3
THA.LOC104814869 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 3.0e-07 60.1 172 31.4
COL.COLO4_18442 Corchorus olitorius HOM05D002619 ORTHO05D002804 3.9e-07 59.7 201 28.4
FAN15G2760 Fragaria x ananassa HOM05D002619 ORTHO05D002804 3.9e-07 59.7 198 28.8
Medtr2g096360 Medicago truncatula HOM05D002619 ORTHO05D002804 3.9e-07 59.7 176 31.2
MELO3C020695.2 Cucumis melo HOM05D002619 ORTHO05D002804 5.1e-07 59.3 175 32.6
Lalb_Chr01g0003831 Lupinus albus HOM05D002619 ORTHO05D002804 5.1e-07 59.3 170 30.6
THA.LOC104815768 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 5.1e-07 59.3 180 30.6
SHI05972 Sapria himalayana HOM05D002619 ORTHO05D002804 6.7e-07 58.9 203 29.1
Psat3g049440 Pisum sativum HOM05D017850 ORTHO05D002804 8.7e-07 58.5 135 36.3
Duzib150G0531 Durio zibethinus HOM05D002619 ORTHO05D002804 1.5e-06 57.8 199 30.2
ECA248G0080 Erigeron canadensis HOM05D002619 ORTHO05D002804 1.5e-06 57.8 196 29.1
FAN10G0879 Fragaria x ananassa HOM05D002619 ORTHO05D002804 1.5e-06 57.8 191 28.8
Glyma.03G064100 Glycine max HOM05D002307 ORTHO05D002378 1.5e-06 57.8 43 62.8
Sabra16G0141400 Salix brachista HOM05D002619 ORTHO05D002804 1.5e-06 57.8 198 31.3
Sp6g21430 Schrenkiella parvula HOM05D002619 ORTHO05D002804 1.5e-06 57.8 171 33.3
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 1.9e-06 57.4 182 31.9
FAN10G0678 Fragaria x ananassa HOM05D002619 ORTHO05D002804 1.9e-06 57.4 191 28.3
AUR62009630 Chenopodium quinoa HOM05D002619 ORTHO05D002804 2.5e-06 57.0 53 52.8
CsaV3_1G033710 Cucumis sativus L. HOM05D002619 ORTHO05D002804 2.5e-06 57.0 175 32.0
Sopen11g030810 Solanum pennellii HOM05D002619 ORTHO05D002804 2.5e-06 57.0 167 31.1
arahy.Tifrunner.gnm1.ann1.S371Q2 Arachis hypogaea HOM05D002619 ORTHO05D002804 3.3e-06 56.6 160 30.6
MBI14_g29800_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 3.3e-06 56.6 197 28.9
Prupe.6G085300 Prunus persica HOM05D002619 ORTHO05D002804 3.3e-06 56.6 196 29.6
Solyc06g005300.4 Solanum lycopersicum HOM05D002619 ORTHO05D002804 3.3e-06 56.6 171 32.2
COL.COLO4_09862 Corchorus olitorius HOM05D002307 ORTHO05D002378 4.3e-06 56.2 171 27.5
Glyma.11G143300 Glycine max HOM05D002619 ORTHO05D002804 4.3e-06 56.2 195 31.3
Gorai.013G265500 Gossypium raimondii HOM05D002619 ORTHO05D002804 4.3e-06 56.2 175 30.3
SHI08831 Sapria himalayana HOM05D002307 ORTHO05D002378 4.3e-06 56.2 69 47.8
Sopen06g001280 Solanum pennellii HOM05D002619 ORTHO05D002804 4.3e-06 56.2 174 32.8
Thecc.10G087300 Theobroma cacao HOM05D002307 ORTHO05D002378 4.3e-06 56.2 186 29.6
Gohir.D10G208601 Gossypium hirsutum HOM05D002307 ORTHO05D002378 5.6e-06 55.8 40 62.5
Gorai.001G107800 Gossypium raimondii HOM05D002619 ORTHO05D002804 5.6e-06 55.8 167 30.5
Rhsim03G0112500 Rhododendron simsii HOM05D002307 ORTHO05D002378 5.6e-06 55.8 40 65.0
Aa31LG5G22820 Aethionema arabicum HOM05D010370 ORTHO05D012294 9.6e-06 55.1 171 30.4
AUR62001842 Chenopodium quinoa HOM05D002619 ORTHO05D002804 9.6e-06 55.1 43 60.5
Duzib114G0495 Durio zibethinus HOM05D002307 ORTHO05D002378 9.6e-06 55.1 173 27.2
Gohir.D13G234700 Gossypium hirsutum HOM05D002619 ORTHO05D002804 9.6e-06 55.1 175 29.7
Manes.10G051600 Manihot esculenta HOM05D002307 ORTHO05D002378 9.6e-06 55.1 43 60.5
RhsimUnG0033000 Rhododendron simsii HOM05D002307 ORTHO05D002378 9.6e-06 55.1 40 65.0
Sed0021945 Sechium edule HOM05D002619 ORTHO05D002804 9.6e-06 55.1 171 29.2
SGA_v2.0_scaffold62G21376 Striga asiatica HOM05D002307 ORTHO05D002378 9.6e-06 55.1 69 42.0


User provided reference genes

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