Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 1.3e-193 679.5 332 100.0
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 3.6e-151 538.5 277 96.8
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.8e-150 536.2 277 96.4
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.5e-141 506.5 261 96.6
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 4.4e-141 505.0 261 95.8
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.5e-136 489.2 239 100.0
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.3e-135 486.9 239 99.6
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 4.8e-135 485.0 239 98.7
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 4.8e-135 485.0 239 98.7
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 2.4e-134 482.6 239 98.7
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.2e-133 480.3 266 91.7
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.2e-132 476.1 239 97.5
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.2e-132 476.1 239 97.5
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 3.0e-129 465.7 239 95.8
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 3.0e-129 465.7 239 95.8
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 6.7e-129 464.5 239 95.8
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.5e-128 463.4 239 95.8
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.9e-128 463.0 239 95.4
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 3.3e-128 462.2 239 95.0
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 3.3e-128 462.2 239 95.0
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 3.3e-128 462.2 239 95.0
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 3.3e-128 462.2 239 95.0
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 3.3e-128 462.2 239 95.0
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 3.3e-128 462.2 239 95.0
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 3.3e-128 462.2 239 95.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 3.3e-128 462.2 239 95.0
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 5.6e-128 461.5 239 95.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.4e-128 461.1 239 94.6
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 7.4e-128 461.1 239 94.6
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 9.6e-128 460.7 239 95.4
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.3e-127 460.3 239 95.4
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 3.7e-127 458.8 239 94.6
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 4.8e-127 458.4 239 94.6
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 6.2e-127 458.0 239 94.1
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 6.2e-127 458.0 239 94.1
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.1e-126 457.2 252 90.9
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.1e-126 457.2 252 90.9
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.8e-126 456.4 239 95.0
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.4e-126 456.1 239 94.1
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 3.1e-126 455.7 239 94.1
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 5.3e-126 454.9 239 93.7
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 6.9e-126 454.5 239 94.6
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 7.9e-122 441.0 232 94.8
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 2.3e-121 439.5 232 94.4
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 7.4e-120 434.5 277 81.9
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 7.4e-120 434.5 239 90.8
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 9.6e-120 434.1 291 78.0
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 2.6e-117 426.0 261 84.7
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-116 421.4 239 87.0
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.2e-114 417.2 287 76.3
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.7e-114 416.0 239 87.9
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 7.9e-114 414.5 239 87.0
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 5.1e-113 411.8 208 97.1
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.9e-112 409.8 239 85.8
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 1.2e-106 390.6 206 94.2
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 1.2e-106 390.6 206 94.2
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.3e-103 380.6 202 94.6
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 4.1e-102 375.6 239 80.8
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.6e-101 372.9 209 90.9
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 6.5e-100 368.2 188 95.7
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 2.5e-99 366.3 188 95.7
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-98 361.3 239 78.7
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 1.4e-94 350.5 187 93.6
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.2e-91 339.0 188 88.3
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-85 320.9 179 88.8
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 1.0e-81 307.8 160 94.4
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 4.2e-75 285.8 281 60.9
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 7.2e-75 285.0 150 94.7
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 9.4e-75 284.6 150 94.0
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.7e-74 282.3 159 89.9
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 2.6e-72 276.6 148 93.9
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 1.8e-70 270.4 218 67.0
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.9e-69 265.4 195 73.8
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.0e-68 264.6 140 92.1
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 2.9e-68 263.1 143 89.5
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 9.2e-62 241.5 124 94.4
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 3.5e-61 239.6 120 99.2
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.0e-57 228.0 257 47.9
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.4e-57 227.6 114 95.6
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 3.0e-57 226.5 117 94.0
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 6.4e-55 218.8 108 98.1
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-54 217.2 155 74.2
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 3.9e-52 209.5 115 92.2
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.1e-50 203.8 116 85.3
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.4e-49 201.1 103 93.2
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.2e-49 199.1 98 96.9
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 8.9e-49 198.4 105 93.3
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 4.6e-45 186.0 101 93.1
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 2.1e-42 177.2 96 86.5
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 8.1e-42 175.3 141 67.4
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 3.9e-36 156.4 100 81.0
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.6e-35 152.5 179 51.4
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.2e-34 151.4 82 92.7
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.2e-33 146.0 149 56.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 4.4e-32 142.9 213 36.2
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 7.6e-32 142.1 83 84.3
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-31 141.0 188 44.7
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 5.4e-30 136.0 63 100.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-29 134.4 101 72.3
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.6e-29 132.9 100 71.0
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 4.6e-29 132.9 93 74.2
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 4.6e-29 132.9 95 74.7
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 6.2e-26 122.5 82 78.0
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 3.4e-24 116.7 154 47.4
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-23 114.8 79 77.2
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.8e-23 113.2 57 93.0
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 6.4e-23 112.5 55 94.5
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 1.2e-21 108.2 172 43.0
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 2.1e-21 107.5 53 96.2
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.3e-19 100.1 64 78.1
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 7.3e-19 99.0 105 55.2
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 3.6e-18 96.7 48 93.8
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.8e-17 94.4 67 71.6
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 4.5e-16 89.7 119 46.2
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-15 88.2 61 67.2
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-15 87.4 48 83.3
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-14 85.1 59 72.9
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 1.9e-14 84.3 53 86.8
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.3e-14 82.0 56 76.8
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.5e-13 80.1 53 83.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 4.6e-13 79.7 59 72.9
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 6.0e-13 79.3 84 51.2
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 7.4e-11 72.4 58 69.0
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 2.1e-10 70.9 36 83.3
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 5.3e-09 66.2 31 93.5
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.0e-09 65.5 31 90.3
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 3.4e-08 63.5 29 96.6
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 5.8e-08 62.8 49 69.4
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 3.8e-07 60.1 32 84.4
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 6.4e-07 59.3 70 42.9
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.1e-06 58.5 31 83.9
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-06 57.4 55 56.4
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 5.5e-06 56.2 58 39.7


User provided reference genes

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