Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 0.0e+00 1640.6 887 100.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 0.0e+00 1401.7 903 87.6
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 8.1e-190 668.3 1005 46.8
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 3.1e-181 639.8 1006 45.3
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.2e-148 531.6 914 44.2
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.6e-148 530.4 981 41.8
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 1.5e-143 514.6 807 46.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 7.0e-141 505.8 910 44.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 3.2e-130 470.3 950 40.8
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 8.9e-112 409.1 981 37.1
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 4.6e-108 396.7 809 40.5
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 2.3e-104 384.4 954 37.3
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 7.8e-100 369.4 754 41.9
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 2.8e-89 334.3 903 33.9
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 3.0e-67 261.2 1078 30.8
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.0e-63 248.4 1075 27.8
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.6e-55 221.5 993 29.9
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.4e-53 215.7 476 39.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 7.1e-53 213.4 798 31.8
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.3e-51 209.1 463 39.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.3e-51 209.1 727 32.7
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.8e-51 208.8 303 44.2
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.9e-51 207.6 481 39.5
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.8e-49 201.4 468 37.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 8.2e-49 199.9 576 33.7
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 2.4e-48 198.4 411 36.0
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.1e-48 198.0 668 31.0
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.1e-48 198.0 465 37.0
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 5.9e-47 193.7 434 36.6
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-45 189.5 436 36.7
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.1e-45 189.5 471 36.3
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.9e-45 188.7 316 42.7
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 2.5e-45 188.3 673 31.2
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 2.5e-45 188.3 388 36.9
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 3.6e-44 184.5 411 37.0
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 7.9e-44 183.3 408 36.0
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.3e-43 182.6 434 37.1
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 3.9e-43 181.0 311 45.3
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.1e-43 180.6 375 39.2
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 1.5e-42 179.1 479 33.0
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.9e-42 178.7 732 28.1
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 2.5e-42 178.3 941 28.5
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 3.3e-42 177.9 460 37.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.7e-41 174.5 489 35.8
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 3.7e-41 174.5 638 29.9
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.1e-40 172.9 346 40.8
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.4e-40 172.6 959 26.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 2.0e-39 168.7 291 41.2
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 4.5e-39 167.5 675 29.6
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 7.7e-39 166.8 678 30.4
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.0e-38 166.4 675 29.0
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.3e-38 166.0 468 34.2
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.2e-38 165.2 399 35.8
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.4e-37 162.5 397 36.5
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.9e-37 162.2 400 36.8
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.5e-37 161.8 683 31.8
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 3.2e-37 161.4 533 32.6
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 3.2e-37 161.4 306 37.9
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.5e-37 160.6 334 35.6
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.2e-37 160.2 400 36.5
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 9.4e-37 159.8 777 29.1
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.2e-36 159.5 413 35.6
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.1e-36 158.7 282 40.1
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.7e-36 158.3 396 35.4
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.3e-35 155.2 226 46.9
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 5.1e-35 154.1 712 27.4
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.5e-34 152.5 348 36.8
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.7e-33 149.1 396 35.9
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.8e-33 148.3 605 28.4
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 6.3e-33 147.1 420 35.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 4.1e-32 144.4 383 35.2
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 9.1e-32 143.3 331 33.2
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 9.1e-32 143.3 228 50.9
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.6e-31 141.7 166 51.2
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.0e-30 139.8 469 31.8
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.0e-30 139.8 267 37.8
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 5.0e-30 137.5 606 30.2
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.1e-29 136.3 690 30.0
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-29 136.3 412 31.8
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-29 136.3 396 36.1
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.2e-29 134.8 343 35.3
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 3.2e-29 134.8 220 42.7
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 9.4e-29 133.3 432 33.3
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 3.6e-28 131.3 307 34.5
TPR.G25255 Trifolium pratense HOM05D003739 ORTHO05D003996 4.7e-28 131.0 192 45.3
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.0e-26 125.6 345 32.5
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 2.6e-26 125.2 231 36.8
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.7e-25 122.5 289 33.9
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.8e-25 121.7 164 47.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 3.7e-25 121.3 291 34.4
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 4.8e-25 120.9 138 49.3
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 8.2e-25 120.2 270 35.6
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.1e-24 119.8 287 33.8
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.1e-24 119.8 443 29.3
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.8e-24 119.0 367 31.6
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 7.0e-24 117.1 340 31.2
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.2e-23 116.3 184 40.8
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.6e-23 115.9 328 34.1
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 7.7e-23 113.6 271 35.4
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.0e-22 113.2 584 28.4
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.3e-22 112.8 350 33.7
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.3e-22 112.8 288 34.0
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.3e-22 112.8 409 31.5
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.7e-22 112.5 338 30.2
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 3.8e-22 111.3 295 34.6
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 3.8e-22 111.3 295 34.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 5.0e-22 110.9 293 33.1
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 5.0e-22 110.9 403 31.3
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 8.5e-22 110.2 287 33.8
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.1e-21 109.8 186 38.2
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.6e-20 105.9 283 31.8
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 4.7e-20 104.4 214 36.0
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.4e-19 102.8 222 34.2
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.4e-19 102.8 344 29.9
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 2.3e-19 102.1 458 27.7
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 8.8e-19 100.1 219 37.0
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.2e-18 99.8 780 27.2
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 2.0e-18 99.0 166 39.8
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 3.3e-18 98.2 349 30.4
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 5.7e-18 97.4 280 32.1
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 5.7e-18 97.4 90 54.4
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 9.7e-18 96.7 98 49.0
TPR.G39627 Trifolium pratense HOM05D003739 ORTHO05D003996 2.8e-17 95.1 124 46.8
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 6.3e-17 94.0 336 30.7
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.1e-16 91.3 237 32.1
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 2.0e-15 89.0 338 27.8
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 2.7e-15 88.6 346 27.7
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 4.5e-15 87.8 316 32.3
TPR.G22277 Trifolium pratense HOM05D003739 ORTHO05D003996 7.7e-15 87.0 109 49.5
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.3e-14 86.3 280 28.2
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.7e-14 85.9 288 28.5
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 2.2e-14 85.5 340 27.9
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 2.9e-14 85.1 136 39.7
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.9e-14 85.1 399 27.8
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.8e-14 84.7 57 63.2
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 8.5e-14 83.6 627 25.7
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.1e-13 83.2 218 34.9
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 9.4e-13 80.1 154 32.5
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.4e-13 80.1 67 53.7
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.6e-12 79.3 94 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.6e-12 79.3 94 44.7
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-11 75.9 224 29.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.8e-11 75.9 531 26.0
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 2.3e-11 75.5 94 39.4
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.8e-11 73.6 390 25.9
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 3.4e-10 71.6 67 47.8
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 4.4e-10 71.2 79 50.6
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 5.7e-10 70.9 99 47.5
Glyma.20G185233 Glycine max HOM05D003739 ORTHO05D003996 5.7e-10 70.9 95 50.5
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.3e-09 69.7 145 35.2
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.2e-09 68.9 290 27.6
Glyma.10G205167 Glycine max HOM05D003739 ORTHO05D003996 4.8e-09 67.8 108 45.4
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 4.8e-09 67.8 253 28.9
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 8.3e-09 67.0 45 64.4
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 8.3e-09 67.0 699 25.6
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 3.5e-07 61.6 499 25.9


User provided reference genes

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