Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 2.0e-63 245.7 136 100.0
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 1.7e-62 242.7 136 99.3
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 2.9e-46 188.7 135 77.0
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 6.0e-44 181.0 137 75.9
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 1.3e-43 179.9 137 74.5
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 1.1e-42 176.8 136 75.7
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 1.9e-42 176.0 130 76.9
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 2.5e-42 175.6 137 71.5
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 4.3e-42 174.9 138 72.5
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 7.4e-42 174.1 129 78.3
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 1.6e-41 172.9 137 73.7
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 3.7e-41 171.8 138 72.5
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 2.7e-36 155.6 114 75.4
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 8.7e-35 150.6 145 65.5
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 1.9e-34 149.4 127 66.9
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 2.5e-34 149.1 122 68.9
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 7.4e-34 147.5 128 67.2
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 1.3e-33 146.7 126 69.8
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 1.3e-33 146.7 109 72.5
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 2.1e-33 146.0 128 64.1
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 3.7e-33 145.2 128 64.1
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 4.8e-33 144.8 127 66.9
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 4.8e-33 144.8 129 67.4
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 4.8e-33 144.8 129 67.4
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 8.2e-33 144.1 96 79.2
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 1.4e-32 143.3 119 68.1
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 2.4e-32 142.5 127 63.0
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 2.4e-32 142.5 127 63.0
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 2.4e-32 142.5 127 63.0
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 4.0e-32 141.7 126 66.7
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 5.3e-32 141.4 130 63.8
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 6.9e-32 141.0 127 63.0
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 9.0e-32 140.6 129 62.0
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 9.0e-32 140.6 117 66.7
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 1.5e-31 139.8 119 63.9
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 3.4e-31 138.7 129 62.8
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 3.4e-31 138.7 125 60.8
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 5.8e-31 137.9 108 68.5
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 5.8e-31 137.9 119 67.2
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 7.6e-31 137.5 129 61.2
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 7.6e-31 137.5 125 62.4
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 7.6e-31 137.5 125 62.4
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 7.6e-31 137.5 125 62.4
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 7.6e-31 137.5 125 62.4
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 1.0e-30 137.1 129 61.2
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 1.3e-30 136.7 125 60.8
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 1.7e-30 136.3 124 62.9
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 2.2e-30 136.0 125 62.4
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 2.2e-30 136.0 125 62.4
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 2.2e-30 136.0 134 58.2
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 3.8e-30 135.2 121 64.5
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 4.9e-30 134.8 127 59.8
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 4.9e-30 134.8 127 59.8
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 4.9e-30 134.8 117 65.0
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 6.5e-30 134.4 127 60.6
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 6.5e-30 134.4 135 61.5
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 1.1e-29 133.7 126 63.5
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 1.1e-29 133.7 122 62.3
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.1e-29 133.7 129 62.8
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 1.1e-29 133.7 131 60.3
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 1.4e-29 133.3 130 62.3
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 1.4e-29 133.3 120 65.0
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 1.9e-29 132.9 118 66.1
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 2.5e-29 132.5 124 64.5
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 5.5e-29 131.3 120 64.2
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 7.1e-29 131.0 125 61.6
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 7.1e-29 131.0 99 68.7
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 9.3e-29 130.6 103 66.0
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.2e-28 130.2 109 62.4
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 1.6e-28 129.8 131 58.8
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 1.6e-28 129.8 109 63.3
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 2.1e-28 129.4 132 61.4
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.1e-28 129.4 124 61.3
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 2.1e-28 129.4 120 63.3
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 3.5e-28 128.6 121 63.6
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 4.6e-28 128.3 111 64.9
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 6.0e-28 127.9 124 60.5
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 7.9e-28 127.5 125 61.6
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 7.9e-28 127.5 126 65.1
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 3.0e-27 125.6 94 68.1
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 6.7e-27 124.4 125 60.8
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 8.7e-27 124.0 130 58.5
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 1.5e-26 123.2 125 59.2
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 3.3e-26 122.1 138 54.3
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 5.7e-26 121.3 118 59.3
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 7.4e-26 120.9 118 59.3
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 1.3e-25 120.2 118 60.2
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 8.2e-25 117.5 125 57.6
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 3.1e-24 115.5 120 57.5
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 4.1e-24 115.2 118 58.5
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 6.9e-24 114.4 126 55.6
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 6.9e-24 114.4 117 58.1
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 9.0e-24 114.0 80 72.5
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 2.6e-23 112.5 90 63.3
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 2.6e-23 112.5 94 61.7
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 2.6e-23 112.5 124 54.0
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 2.6e-23 112.5 112 54.5
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 5.9e-23 111.3 112 57.1
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 1.3e-22 110.2 125 54.4
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 1.7e-22 109.8 121 53.7
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 2.2e-22 109.4 96 64.6
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.2e-22 109.4 126 53.2
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 2.2e-22 109.4 117 55.6
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 3.8e-22 108.6 95 69.5
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 5.0e-22 108.2 102 57.8
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 6.5e-22 107.8 117 55.6
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 1.1e-21 107.1 125 51.2
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 1.1e-21 107.1 127 52.8
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 1.4e-21 106.7 125 51.2
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 1.9e-21 106.3 88 60.2
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 1.9e-21 106.3 105 59.0
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 9.4e-21 104.0 127 50.4
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 1.1e-18 97.1 131 47.3
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 7.4e-18 94.4 170 38.8
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 1.3e-17 93.6 63 76.2
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 6.3e-17 91.3 109 54.1
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.1e-16 90.5 63 77.8
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 6.9e-16 87.8 103 48.5
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 2.6e-15 85.9 111 46.8
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 2.6e-15 85.9 83 55.4
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 4.5e-15 85.1 88 51.1
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 1.1e-10 70.5 88 54.5
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 7.0e-08 61.2 127 35.4
Mapoly0076s0084 Marchantia polymorpha HOM05D006057 ORTHO05D007224 2.6e-07 59.3 108 37.0
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 3.4e-07 58.9 107 34.6
Ah.15g097910 Amaranthus hybridus HOM05D012832 ORTHO05D019522 2.2e-06 56.2 38 68.4
Ah.15g098350 Amaranthus hybridus HOM05D012832 ORTHO05D019522 2.2e-06 56.2 38 68.4
TPR.G2637 Trifolium pratense HOM05D006057 ORTHO05D007224 2.9e-06 55.8 100 43.0


User provided reference genes

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