Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 8.7e-100 367.1 199 100.0
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 3.4e-64 248.8 144 95.8
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.4e-52 210.3 206 67.0
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.1e-51 207.2 210 65.2
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.4e-49 200.3 206 63.6
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.1e-49 199.1 207 63.3
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 7.0e-49 198.0 217 60.4
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 9.1e-49 197.6 208 62.0
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.0e-48 196.4 210 63.8
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 7.7e-48 194.5 210 63.8
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 3.8e-47 192.2 212 60.8
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.1e-46 190.7 211 64.9
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.9e-46 189.9 212 59.4
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.0e-44 184.1 210 62.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 4.0e-44 182.2 213 57.7
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 4.8e-42 175.3 211 59.2
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 6.3e-42 174.9 211 56.9
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.6e-40 170.2 213 60.6
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 2.7e-40 169.5 213 58.7
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 2.7e-40 169.5 216 60.2
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 7.7e-40 167.9 216 58.8
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 2.2e-39 166.4 215 60.0
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 8.5e-39 164.5 210 54.3
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 4.7e-37 158.7 214 57.0
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.3e-36 156.4 230 51.7
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 4.0e-36 155.6 212 52.8
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 6.8e-36 154.8 222 53.6
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 8.8e-36 154.5 214 57.5
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 8.8e-36 154.5 207 54.6
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.0e-35 153.3 205 57.6
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.6e-35 152.9 222 49.5
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 5.7e-35 151.8 226 52.2
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 7.5e-35 151.4 218 53.7
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 9.8e-35 151.0 214 53.7
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.2e-34 149.8 203 53.7
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.2e-34 149.8 203 53.7
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 4.1e-33 145.6 213 51.6
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.4e-33 145.2 202 55.9
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 9.1e-33 144.4 217 51.6
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.6e-32 143.7 207 49.3
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.5e-32 142.1 177 55.4
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 8.5e-31 137.9 218 50.0
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.5e-30 134.4 206 52.9
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.2e-29 134.0 221 49.3
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.2e-29 134.0 213 48.8
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 2.8e-29 132.9 189 48.1
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 2.8e-29 132.9 217 48.4
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 8.0e-29 131.3 226 43.4
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.0e-28 131.0 228 48.2
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.3e-28 129.8 206 52.4
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 3.0e-28 129.4 216 47.7
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.0e-28 129.0 205 51.7
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.2e-27 127.5 213 46.9
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.5e-27 127.1 221 43.4
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.6e-27 126.3 216 50.0
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.6e-27 126.3 208 50.0
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.6e-27 126.3 210 45.2
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.7e-27 125.2 223 47.5
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-26 123.6 224 47.3
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 2.8e-26 122.9 216 47.2
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.8e-26 122.9 223 47.1
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.7e-26 122.5 222 42.8
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 3.7e-26 122.5 159 57.2
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.7e-26 122.5 219 47.0
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 4.9e-26 122.1 223 45.3
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.3e-26 121.7 225 46.7
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.3e-26 121.3 234 45.3
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.1e-25 120.9 217 46.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.1e-25 120.9 215 47.0
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-25 119.8 219 45.7
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.1e-25 119.4 227 45.4
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-24 117.5 196 51.5
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.2e-24 117.5 225 44.0
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.2e-24 117.5 180 53.3
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.0e-24 116.7 232 43.5
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.7e-24 116.3 216 46.3
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 5.9e-24 115.2 218 43.1
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 7.8e-24 114.8 214 47.2
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.3e-23 114.0 213 44.1
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.3e-23 113.2 216 45.8
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.1e-22 110.9 208 43.8
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 3.3e-22 109.4 129 55.8
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 3.3e-22 109.4 163 51.5
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 5.6e-22 108.6 219 42.9
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 9.5e-22 107.8 147 52.4
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.2e-21 107.5 223 44.4
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.2e-21 107.5 218 43.1
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 2.1e-21 106.7 209 41.6
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 2.1e-21 106.7 222 41.0
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 2.8e-21 106.3 209 41.6
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.6e-21 105.9 224 43.3
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.6e-21 105.9 206 43.7
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 6.1e-21 105.1 208 42.3
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 6.1e-21 105.1 207 42.5
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 6.1e-21 105.1 208 42.3
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 8.0e-21 104.8 219 42.5
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-20 104.4 208 42.3
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-20 104.0 217 44.7
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-20 104.0 212 41.5
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-20 104.0 217 43.8
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.4e-20 104.0 217 43.8
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.8e-20 103.6 225 42.7
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 4.0e-20 102.4 209 42.1
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 4.0e-20 102.4 214 41.1
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 6.8e-20 101.7 221 44.8
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 8.9e-20 101.3 216 42.6
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 8.9e-20 101.3 216 42.6
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.2e-19 100.9 217 41.5
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.2e-19 100.9 225 41.3
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.4e-19 99.0 199 44.2
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 4.4e-19 99.0 225 40.4
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 7.5e-19 98.2 214 42.1
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 9.8e-19 97.8 173 49.7
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.7e-18 97.1 211 41.2
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.9e-18 96.3 215 40.9
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 3.7e-18 95.9 213 41.3
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 3.7e-18 95.9 213 39.4
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 4.9e-18 95.5 205 40.0
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 4.9e-18 95.5 184 42.9
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 6.4e-18 95.1 221 39.4
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.4e-17 94.0 217 39.6
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 5.4e-17 92.0 186 39.8
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 7.0e-17 91.7 193 40.4
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 9.2e-17 91.3 217 39.6
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.6e-16 90.5 193 40.4
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 2.0e-16 90.1 225 42.2
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.6e-16 89.0 172 43.0
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 1.3e-15 87.4 212 38.7
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 5.0e-15 85.5 210 36.7
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.0e-15 85.5 154 43.5
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-14 82.8 150 44.7
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.3e-14 82.8 218 37.2
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 4.3e-14 82.4 198 39.9
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.3e-14 82.4 205 38.0
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 5.6e-14 82.0 208 40.9
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 5.6e-14 82.0 206 35.4
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 4.7e-13 79.0 152 46.7
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 6.2e-13 78.6 150 42.7
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 8.0e-13 78.2 128 44.5
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-12 77.0 207 38.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-12 77.0 199 38.7
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.8e-12 77.0 146 43.8
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.8e-12 77.0 206 34.0
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.1e-12 76.3 215 39.5
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.2e-12 75.5 149 43.6
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-11 73.9 151 45.0
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-11 73.9 198 38.4
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-11 73.9 151 45.0
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 9.8e-11 71.2 220 35.9
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 9.8e-11 71.2 203 35.5
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 9.8e-11 71.2 160 44.4
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.3e-10 70.9 207 33.3
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.9e-10 68.9 209 36.4
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 1.1e-09 67.8 208 37.0
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 2.4e-09 66.6 107 48.6
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 3.2e-09 66.2 126 47.6
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 4.1e-09 65.9 213 35.2
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 5.4e-09 65.5 64 60.9
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 9.2e-09 64.7 141 41.1
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 9.2e-09 64.7 200 35.0
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.6e-08 63.9 209 34.9
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 2.7e-08 63.2 211 34.1
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 4.6e-08 62.4 210 35.7
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.3e-07 60.8 112 45.5
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.3e-07 60.8 218 35.3
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.3e-07 60.8 206 35.4
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.3e-07 60.8 92 52.2
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 5.0e-07 58.9 123 44.7
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 6.6e-07 58.5 59 57.6
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 8.6e-07 58.2 217 32.3
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 1.5e-06 57.4 142 35.2
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-06 57.0 61 55.7
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 4.3e-06 55.8 160 36.9
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 7.3e-06 55.1 75 48.0


User provided reference genes

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