Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 2.2e-90 335.5 160 100.0
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-89 333.2 160 99.4
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 5.5e-89 330.9 160 98.8
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 5.5e-89 330.9 160 98.8
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.3e-71 272.3 160 79.4
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 8.9e-71 270.4 159 77.4
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.5e-70 269.6 160 78.8
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 4.4e-70 268.1 160 77.5
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.7e-69 266.2 160 76.9
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 6.4e-69 264.2 165 76.4
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 8.3e-69 263.8 165 76.4
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 8.3e-69 263.8 165 77.0
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.4e-68 262.3 165 75.2
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 4.1e-68 261.5 165 75.2
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 9.2e-68 260.4 165 75.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 9.2e-68 260.4 165 75.2
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 4.6e-67 258.1 160 76.9
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 6.0e-67 257.7 165 74.5
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 6.0e-67 257.7 160 73.8
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 6.0e-67 257.7 164 75.6
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 7.8e-67 257.3 165 73.9
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.0e-66 256.9 160 76.2
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.0e-66 256.9 165 73.9
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.0e-66 256.9 165 72.7
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.3e-66 256.5 160 75.6
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.7e-66 256.1 165 73.3
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.9e-66 255.0 165 72.7
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.0e-66 254.6 160 73.8
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 5.0e-66 254.6 165 74.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 5.0e-66 254.6 165 75.2
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.6e-66 254.2 143 82.5
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 8.6e-66 253.8 160 75.6
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.5e-65 253.1 160 73.8
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.5e-65 253.1 165 75.2
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.9e-65 252.7 143 81.1
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 2.5e-65 252.3 165 72.7
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 2.5e-65 252.3 165 72.7
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 4.3e-65 251.5 143 81.8
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 5.6e-65 251.1 165 73.9
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 9.5e-65 250.4 165 72.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 9.5e-65 250.4 165 72.7
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 9.5e-65 250.4 145 78.6
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 9.5e-65 250.4 160 70.6
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.1e-64 249.2 142 81.7
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 6.2e-64 247.7 144 76.4
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 8.0e-64 247.3 165 71.5
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.4e-63 246.5 144 75.7
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 1.4e-63 246.5 160 73.1
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.8e-63 246.1 161 72.7
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 3.1e-63 245.4 165 70.9
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 3.1e-63 245.4 143 79.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 4.0e-63 245.0 160 73.1
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 8.9e-63 243.8 165 71.5
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.5e-62 243.0 139 79.1
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.5e-62 243.0 161 70.8
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.5e-62 243.0 143 75.5
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.5e-62 243.0 159 70.4
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 2.0e-62 242.7 143 76.2
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.6e-62 242.3 143 77.6
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 2.6e-62 242.3 161 70.8
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 4.4e-62 241.5 165 69.7
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 9.8e-62 240.4 142 75.4
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.3e-61 240.0 143 74.1
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.3e-61 240.0 143 75.5
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.3e-61 240.0 143 75.5
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.7e-61 239.6 142 74.6
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 4.9e-61 238.0 142 76.8
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.9e-61 238.0 143 76.2
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.4e-60 236.5 165 67.9
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.9e-60 236.1 165 67.9
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 4.1e-60 235.0 160 70.0
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 5.4e-60 234.6 142 76.8
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.4e-60 234.6 143 73.4
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 7.0e-60 234.2 145 75.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 1.2e-59 233.4 165 67.3
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.6e-59 233.0 142 75.4
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.6e-59 233.0 165 66.1
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 3.5e-59 231.9 161 65.8
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 4.6e-59 231.5 165 65.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 4.6e-59 231.5 165 66.1
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 7.8e-59 230.7 165 65.5
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 7.8e-59 230.7 165 65.5
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.8e-59 230.7 165 65.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.0e-58 230.3 165 65.5
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 2.3e-58 229.2 165 64.8
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.3e-58 229.2 165 68.5
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 5.1e-58 228.0 165 64.8
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 5.1e-58 228.0 165 64.2
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 8.6e-58 227.3 165 63.6
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 8.6e-58 227.3 160 65.6
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.6e-58 227.3 140 72.1
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.5e-57 226.5 146 72.6
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.9e-57 226.1 165 64.2
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.5e-57 225.7 143 71.3
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.5e-57 225.7 143 71.3
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 4.3e-57 224.9 143 69.2
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 4.3e-57 224.9 143 69.2
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.6e-57 224.6 136 73.5
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 9.5e-57 223.8 159 66.7
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.6e-56 223.0 165 66.7
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 2.8e-56 222.2 157 67.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 3.6e-56 221.9 143 67.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 6.2e-56 221.1 139 72.7
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-55 220.3 143 68.5
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 4.0e-55 218.4 165 65.5
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.8e-55 217.6 124 80.6
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.5e-54 216.5 143 67.8
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.4e-54 215.3 145 67.6
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 4.4e-54 214.9 165 63.0
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 3.7e-53 211.8 162 66.0
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 3.2e-52 208.8 136 68.4
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.1e-52 208.4 139 68.3
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.6e-51 206.5 157 61.8
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 2.1e-51 206.1 166 62.0
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 4.3e-49 198.4 115 78.3
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 1.3e-42 176.8 159 52.8
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 3.9e-42 175.3 165 54.5
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.5e-41 172.6 123 67.5
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 7.3e-41 171.0 159 50.9
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 4.7e-40 168.3 143 58.7
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 8.1e-40 167.5 124 65.3
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 5.8e-38 161.4 103 71.8
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 9.9e-38 160.6 165 53.9
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 2.9e-37 159.1 123 60.2
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.2e-35 153.7 145 52.4
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 2.5e-33 146.0 127 55.9
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 3.3e-33 145.6 166 47.6
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 5.6e-33 144.8 158 48.1
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.4e-31 139.4 178 48.3
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 4.0e-31 138.7 178 48.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 4.0e-31 138.7 165 46.7
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 7.1e-28 127.9 166 44.0
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 2.7e-27 125.9 90 66.7
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 6.0e-27 124.8 167 41.3
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 7.4e-25 117.9 130 49.2
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.8e-22 108.2 67 76.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 4.6e-19 98.6 141 38.3
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 5.8e-14 81.6 61 59.0
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 8.4e-13 77.8 62 62.9
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.0e-10 70.9 52 59.6
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.8e-10 70.1 119 31.9
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 5.1e-10 68.6 58 56.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 3.3e-09 65.9 48 56.2
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 5.9e-06 55.1 46 47.8
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 7.7e-06 54.7 99 33.3


User provided reference genes

Program Settings