Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 5.2e-246 854.0 440 100.0
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.6e-106 389.4 214 88.3
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.9e-94 350.5 212 77.4
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 2.7e-93 346.7 222 73.0
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 6.0e-93 345.5 231 71.9
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 4.3e-91 339.3 223 73.1
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 8.1e-90 335.1 230 71.7
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 9.9e-88 328.2 211 72.5
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.9e-87 325.9 210 75.7
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 6.6e-84 315.5 212 73.1
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-78 297.7 216 73.1
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.9e-78 297.4 165 81.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.2e-77 294.7 210 63.8
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.3e-76 290.4 205 63.9
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.0e-76 290.0 229 60.7
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.9e-76 289.7 211 72.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 3.9e-76 289.7 210 62.9
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 7.3e-75 285.4 209 62.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.1e-74 283.9 210 62.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 3.6e-74 283.1 209 63.6
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 3.6e-74 283.1 232 57.3
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 4.8e-74 282.7 205 62.0
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 8.1e-74 282.0 222 58.1
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 4.0e-73 279.6 213 62.9
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 9.0e-73 278.5 202 63.4
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 9.0e-73 278.5 209 58.9
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.2e-72 278.1 208 61.5
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 5.8e-72 275.8 210 58.1
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 7.6e-72 275.4 198 62.6
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 9.9e-72 275.0 209 63.2
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.3e-71 274.6 210 61.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.7e-71 274.2 209 63.2
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.9e-71 273.5 209 61.7
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 3.8e-71 273.1 205 59.5
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 3.8e-71 273.1 206 60.2
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.9e-70 270.8 217 59.4
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.2e-70 270.0 212 60.8
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 3.2e-70 270.0 195 61.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 4.2e-70 269.6 210 60.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.2e-70 269.6 210 58.1
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 5.4e-70 269.2 211 62.6
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 7.1e-70 268.9 207 60.9
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 7.1e-70 268.9 195 60.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.1e-69 267.3 195 61.0
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 2.7e-69 266.9 209 59.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.7e-69 266.9 205 59.0
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 4.6e-69 266.2 211 57.3
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 4.6e-69 266.2 189 64.6
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 6.0e-69 265.8 211 58.3
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.0e-68 265.0 206 57.8
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.3e-68 264.6 206 58.3
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.3e-68 263.8 210 57.6
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 3.9e-68 263.1 219 53.0
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 5.1e-68 262.7 209 56.9
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 6.6e-68 262.3 212 53.8
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.7e-68 261.9 216 56.9
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.9e-67 260.8 209 53.6
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.9e-67 260.8 209 54.1
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.9e-67 260.8 210 58.1
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.9e-67 260.8 237 52.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.3e-67 260.0 211 54.0
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.3e-67 260.0 212 54.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 4.3e-67 259.6 209 54.5
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 7.3e-67 258.8 214 53.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 9.6e-67 258.5 209 54.1
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 9.6e-67 258.5 212 54.7
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-66 257.7 209 54.5
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.8e-66 256.9 209 53.1
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.8e-66 256.9 221 57.9
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.6e-66 256.5 196 59.7
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 2.4e-65 253.8 210 53.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 5.3e-65 252.7 209 53.6
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-64 251.5 209 53.1
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.2e-64 251.5 209 53.1
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.2e-64 251.5 208 54.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.5e-64 251.1 220 49.5
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.6e-64 250.4 209 50.7
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.6e-64 250.4 209 54.5
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 5.8e-64 249.2 195 55.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 7.6e-64 248.8 209 53.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-63 248.1 209 52.2
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-63 247.7 193 54.9
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.7e-63 247.7 193 54.9
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.9e-63 246.9 191 56.0
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 3.8e-63 246.5 185 59.5
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 6.4e-63 245.7 242 50.4
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 8.4e-63 245.4 197 56.9
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.2e-62 243.4 194 56.2
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.2e-62 243.0 209 52.6
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 7.1e-62 242.3 214 51.9
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.1e-61 240.7 194 54.1
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.1e-61 240.7 200 54.0
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 4.6e-61 239.6 194 57.7
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.0e-61 239.2 232 53.4
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.0e-61 239.2 210 53.8
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.8e-60 237.7 208 52.4
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 3.9e-60 236.5 195 53.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 8.7e-60 235.3 231 47.6
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.6e-58 231.1 200 52.5
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.7e-58 229.9 209 51.7
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 4.8e-58 229.6 221 49.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 8.1e-58 228.8 201 56.2
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.4e-57 228.0 191 56.5
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 5.3e-57 226.1 222 49.1
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 9.0e-57 225.3 204 50.0
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.0e-55 221.9 199 50.3
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.7e-55 221.1 192 51.6
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.8e-55 219.9 212 50.0
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.2e-54 216.5 230 52.2
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 2.1e-53 214.2 203 50.7
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 4.6e-53 213.0 175 54.3
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 6.0e-53 212.6 204 52.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 7.9e-53 212.2 188 52.7
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.8e-52 211.1 162 60.5
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.3e-52 210.7 184 51.6
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.1e-51 208.4 195 53.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.9e-51 207.6 185 55.1
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 4.3e-51 206.5 166 55.4
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 5.7e-51 206.1 108 88.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.0e-47 195.3 197 47.2
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 6.5e-47 192.6 126 66.7
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 7.9e-45 185.7 245 43.3
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.3e-44 184.9 232 40.9
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 2.3e-44 184.1 185 47.6
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 8.7e-44 182.2 250 44.4
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 4.1e-41 173.3 214 37.4
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 5.3e-41 172.9 108 69.4
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.6e-40 170.6 194 43.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 5.9e-40 169.5 128 54.7
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 7.9e-37 159.1 135 59.3
arahy.Tifrunner.gnm1.ann1.D4FP70 Arachis hypogaea HOM05D010275 ORTHO05D012627 2.1e-29 134.4 65 98.5
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 4.7e-29 133.3 155 45.2
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.8e-26 124.0 86 58.1
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.5e-22 110.9 106 49.1
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.0e-19 101.3 68 57.4
Medtr0212s0010 Medicago truncatula HOM05D010275 ORTHO05D012627 7.5e-19 99.4 50 90.0
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.4e-17 95.1 61 60.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.4e-17 95.1 58 67.2
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.8e-17 94.7 81 58.0
SHI41353 Sapria himalayana HOM05D010275 ORTHO05D012627 1.2e-16 92.0 50 84.0
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.6e-16 91.7 53 67.9
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.6e-16 91.7 89 47.2
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 4.5e-16 90.1 52 69.2
SHI35998 Sapria himalayana HOM05D010275 ORTHO05D012627 4.5e-16 90.1 46 89.1
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 5.0e-15 86.7 81 53.1
SHI41259 Sapria himalayana HOM05D010275 ORTHO05D012627 1.1e-14 85.5 50 78.0
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.6e-13 81.6 64 50.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 4.0e-12 77.0 80 48.8
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-11 75.5 60 71.7
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.2e-11 75.5 65 56.9
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.5e-11 75.1 111 39.6
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 2.0e-11 74.7 122 36.1
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.1e-09 68.9 39 66.7
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.4e-09 67.8 50 58.0
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.1e-09 67.4 164 29.9
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.7e-08 64.3 77 45.5
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.7e-07 61.6 53 49.1
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.2e-07 61.2 45 55.6


User provided reference genes

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