Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T9PSLR Arachis hypogaea HOM05D005122 ORTHO05D006057 7.3e-141 503.8 244 100.0
arahy.Tifrunner.gnm1.ann1.C788P2 Arachis hypogaea HOM05D005122 ORTHO05D006057 6.3e-84 314.7 207 81.2
arahy.Tifrunner.gnm1.ann1.EYQ1XG Arachis hypogaea HOM05D005122 ORTHO05D006057 6.3e-84 314.7 207 81.2
Glyma.13G113900 Glycine max HOM05D005122 ORTHO05D006057 1.1e-61 240.7 203 65.0
Glyma.17G045900 Glycine max HOM05D005122 ORTHO05D006057 4.4e-61 238.8 203 64.5
Lalb_Chr13g0299211 Lupinus albus HOM05D005122 ORTHO05D006057 3.7e-60 235.7 219 58.4
VMungo1215G1386 Vigna mungo HOM05D005122 ORTHO05D006057 1.6e-58 230.3 203 63.5
Phvul.003G127600 Phaseolus vulgaris HOM05D005122 ORTHO05D006057 2.2e-57 226.5 202 61.9
Lj4g0009327 Lotus japonicus HOM05D005122 ORTHO05D006057 9.4e-56 221.1 192 61.5
TPR.G12583 Trifolium pratense HOM05D005122 ORTHO05D006057 2.7e-55 219.5 197 58.4
Ca_30968_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 3.0e-54 216.1 203 58.1
Medtr4g124670 Medicago truncatula HOM05D005122 ORTHO05D006057 4.0e-54 215.7 197 57.9
arahy.Tifrunner.gnm1.ann1.UG5RRW Arachis hypogaea HOM05D005122 ORTHO05D006057 9.1e-51 204.5 189 65.6
QL11p002844 Quercus lobata HOM05D005122 ORTHO05D006057 5.0e-49 198.7 196 51.0
MD02G1100300 Malus domestica HOM05D005122 ORTHO05D006057 1.9e-48 196.8 195 53.3
Prupe.7G192500 Prunus persica HOM05D005122 ORTHO05D006057 1.9e-48 196.8 187 55.1
RcHm_v2.0_Chr2g0095891 Rosa chinensis HOM05D005122 ORTHO05D006057 1.9e-48 196.8 199 51.8
Thecc.09G070600 Theobroma cacao HOM05D005122 ORTHO05D006057 1.9e-48 196.8 198 54.0
FvH4_1g09310 Fragaria vesca HOM05D005122 ORTHO05D006057 3.2e-48 196.1 205 49.8
FAN19G2002 Fragaria x ananassa HOM05D005122 ORTHO05D006057 3.2e-48 196.1 205 49.8
Cpa.g.sc82.66 Carica papaya HOM05D005122 ORTHO05D006057 5.5e-48 195.3 217 47.5
FAN28G0954 Fragaria x ananassa HOM05D005122 ORTHO05D006057 9.4e-48 194.5 205 49.8
Cfa002940 Carpinus fangiana HOM05D005122 ORTHO05D006057 1.2e-47 194.1 199 52.3
CANSAT56G2058 Cannabis sativa HOM05D005122 ORTHO05D006057 4.7e-47 192.2 197 51.3
CiPaw.03G200700 Carya illinoinensis HOM05D005122 ORTHO05D006057 8.0e-47 191.4 196 51.0
CANSAT56G0085 Cannabis sativa HOM05D005122 ORTHO05D006057 1.8e-46 190.3 197 50.8
MD15G1223300 Malus domestica HOM05D005122 ORTHO05D006057 5.2e-46 188.7 189 53.4
GSVIVG01015020001 Vitis vinifera HOM05D005122 ORTHO05D006057 5.2e-46 188.7 196 51.5
Manes.16G092800 Manihot esculenta HOM05D005122 ORTHO05D006057 2.0e-45 186.8 191 53.4
Haze_26065 Corylus avellana HOM05D005122 ORTHO05D006057 2.6e-45 186.4 227 46.7
Rhsim05G0002500 Rhododendron simsii HOM05D005122 ORTHO05D006057 4.4e-45 185.7 203 48.3
Ciclev10007237m.g Citrus clementina HOM05D005122 ORTHO05D006057 7.5e-45 184.9 196 52.6
Migut.J00884 Erythranthe guttata HOM05D005122 ORTHO05D006057 7.5e-45 184.9 195 50.8
vmacro06355 Vaccinium macrocarpon HOM05D005122 ORTHO05D006057 9.8e-45 184.5 203 49.8
Rhsim03G0225900 Rhododendron simsii HOM05D005122 ORTHO05D006057 1.8e-43 180.3 194 50.5
Sabra06G0107000 Salix brachista HOM05D005122 ORTHO05D006057 1.8e-43 180.3 187 52.9
Duzib168G0854 Durio zibethinus HOM05D005122 ORTHO05D006057 9.1e-43 177.9 201 50.2
Potri.006G136900 Populus trichocarpa HOM05D005122 ORTHO05D006057 9.1e-43 177.9 199 49.2
CSS0025527 Camellia sinensis var. sinensis HOM05D005122 ORTHO05D006057 1.2e-42 177.6 189 51.3
Gohir.A05G035900 Gossypium hirsutum HOM05D005122 ORTHO05D006057 1.2e-42 177.6 201 48.3
Lj4A920G55 Lonicera japonica HOM05D005122 ORTHO05D006057 2.0e-42 176.8 189 48.7
Gohir.D05G037400 Gossypium hirsutum HOM05D005122 ORTHO05D006057 1.0e-41 174.5 201 48.3
Gorai.009G037900 Gossypium raimondii HOM05D005122 ORTHO05D006057 1.0e-41 174.5 201 48.3
Actinidia39620 Actinidia chinensis HOM05D005122 ORTHO05D006057 1.3e-41 174.1 199 50.3
Nitab4.5_0007169g0020 Nicotiana tabacum HOM05D005122 ORTHO05D006057 1.3e-41 174.1 193 48.2
Peaxi162Scf00191g00046 Petunia axillaris HOM05D005122 ORTHO05D006057 3.8e-41 172.6 219 43.4
Nitab4.5_0000170g0030 Nicotiana tabacum HOM05D005122 ORTHO05D006057 6.6e-41 171.8 193 48.7
TWI34G1091 Tripterygium wilfordii HOM05D005122 ORTHO05D006057 8.6e-41 171.4 203 48.3
Nn8g38537 Nelumbo nucifera HOM05D005122 ORTHO05D006057 1.5e-40 170.6 196 46.9
MSTRG.19429 Avicennia marina HOM05D005122 ORTHO05D006057 2.5e-40 169.9 187 48.1
Atru.chr7.1763 Acer truncatum HOM05D005122 ORTHO05D006057 5.5e-40 168.7 192 50.0
MBI19_g37996_MAGBIO Magnolia biondii HOM05D005122 ORTHO05D006057 6.1e-39 165.2 204 45.1
PSO104G0049 Papaver somniferum HOM05D005122 ORTHO05D006057 6.1e-39 165.2 188 46.8
PGR142G3115 Punica granatum HOM05D005122 ORTHO05D006057 6.1e-39 165.2 200 44.0
Cc06_g12660 Coffea canephora HOM05D005122 ORTHO05D006057 8.0e-39 164.9 192 48.4
PSO421G0465 Papaver somniferum HOM05D005122 ORTHO05D006057 2.3e-38 163.3 184 47.8
DCAR_028528 Daucus carota HOM05D005122 ORTHO05D006057 3.0e-38 162.9 188 47.3
Thhalv10012418m.g Eutrema salsugineum HOM05D005122 ORTHO05D006057 5.7e-37 158.7 200 44.5
AL5G12790 Arabidopsis lyrata HOM05D005122 ORTHO05D006057 9.8e-37 157.9 197 43.7
CAN.G210.4 Capsicum annuum HOM05D005122 ORTHO05D006057 1.3e-36 157.5 193 46.6
SalBow6G0425 Salvia bowleyana HOM05D005122 ORTHO05D006057 1.3e-36 157.5 196 44.9
Aqoxy7G00978 Aquilegia oxysepala HOM05D005122 ORTHO05D006057 2.8e-36 156.4 189 46.6
Aa31LG4G13020 Aethionema arabicum HOM05D005122 ORTHO05D006057 4.9e-36 155.6 202 43.1
AT2G03140 Arabidopsis thaliana HOM05D005122 ORTHO05D006057 6.3e-36 155.2 200 44.0
EL10Ac8g18978 Beta vulgaris HOM05D005122 ORTHO05D006057 2.4e-35 153.3 187 46.5
PGSC0003DMG400013574 Solanum tuberosum HOM05D005122 ORTHO05D006057 2.4e-35 153.3 192 46.9
AUR62028313 Chenopodium quinoa HOM05D005122 ORTHO05D006057 5.4e-35 152.1 194 43.3
AUR62025308 Chenopodium quinoa HOM05D005122 ORTHO05D006057 7.0e-35 151.8 194 43.3
Solyc07g042500.4 Solanum lycopersicum HOM05D005122 ORTHO05D006057 9.2e-35 151.4 192 46.9
Sopen07g022170 Solanum pennellii HOM05D005122 ORTHO05D006057 9.2e-35 151.4 192 46.9
C09p60330 Brassica napus HOM05D005122 ORTHO05D006057 5.9e-34 148.7 200 43.0
Carub.0005s0197 Capsella rubella HOM05D005122 ORTHO05D006057 7.8e-34 148.3 200 41.5
BcaC04g18854 Brassica carinata HOM05D005122 ORTHO05D006057 1.0e-33 147.9 200 43.0
HanXRQChr10g0319771 Helianthus annuus HOM05D005122 ORTHO05D006057 1.3e-33 147.5 197 43.7
BraA10t44307Z Brassica rapa HOM05D005122 ORTHO05D006057 2.9e-33 146.4 200 43.0
Hund26106 Selenicereus undatus HOM05D005122 ORTHO05D006057 3.8e-33 146.0 223 40.4
BolC9t58866H Brassica oleracea HOM05D005122 ORTHO05D006057 6.6e-33 145.2 200 42.5
A10p22480 Brassica napus HOM05D005122 ORTHO05D006057 8.6e-33 144.8 200 42.5
ECA234G0156 Erigeron canadensis HOM05D005122 ORTHO05D006057 1.1e-32 144.4 194 41.2
Sp6g27400 Schrenkiella parvula HOM05D005122 ORTHO05D006057 4.7e-31 139.0 200 40.5
Psat4g019280 Pisum sativum HOM05D005122 ORTHO05D006057 6.1e-31 138.7 96 69.8
MELO3C022901.2 Cucumis melo HOM05D005122 ORTHO05D006057 8.0e-31 138.3 202 37.6
ClCG11G000010 Citrullus lanatus HOM05D005122 ORTHO05D006057 1.0e-30 137.9 203 39.4
Sed0023749 Sechium edule HOM05D005122 ORTHO05D006057 1.4e-30 137.5 207 37.7
Lsat_1_v5_gn_5_139061 Lactuca sativa HOM05D005122 ORTHO05D006057 5.2e-30 135.6 209 39.2
CDE04G2636 Ceratophyllum demersum HOM05D005122 ORTHO05D006057 5.8e-29 132.1 216 37.0
Dinv42429 Davidia involucrata HOM05D005122 ORTHO05D006057 1.3e-28 131.0 131 53.4
Ca_21337_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 4.9e-28 129.0 96 64.6
ATR0681G090 Amborella trichopoda HOM05D005122 ORTHO05D006057 5.4e-27 125.6 198 39.4
HPP92_016226 Vanilla planifolia HOM05D005122 ORTHO05D006057 4.6e-26 122.5 193 38.3
HPP92_016239 Vanilla planifolia HOM05D005122 ORTHO05D006057 7.8e-26 121.7 197 37.6
Zm00001eb313890 Zea mays HOM05D005122 ORTHO05D006057 1.3e-25 120.9 193 34.2
COL.COLO4_21211 Corchorus olitorius HOM05D005122 ORTHO05D006057 2.5e-24 116.7 146 46.6
Ah.14g084680 Amaranthus hybridus HOM05D005122 ORTHO05D006057 1.6e-23 114.0 164 41.5
TAR624G1119 Trochodendron aralioides HOM05D005122 ORTHO05D006057 8.0e-23 111.7 96 58.3
Os09g0436800 Oryza sativa ssp. japonica HOM05D005122 ORTHO05D006057 1.1e-22 111.3 202 33.2
SGA_v2.0_scaffold31G12693 Striga asiatica HOM05D005122 ORTHO05D006057 4.0e-22 109.4 95 55.8
SEGI_27630 Sequoiadendron giganteum HOM05D005122 ORTHO05D006057 1.4e-19 100.9 199 34.7
Eucgr.I00075 Eucalyptus grandis HOM05D005122 ORTHO05D006057 9.2e-19 98.2 125 46.4
Oeu028111.1 Olea europaea HOM05D005122 ORTHO05D006057 1.2e-18 97.8 95 51.6
AagrBONN_evm.TU.Sc2ySwM_362.1932 Anthoceros agrestis HOM05D005122 ORTHO05D006057 2.7e-18 96.7 202 29.2
Mapoly0027s0173 Marchantia polymorpha HOM05D005122 ORTHO05D006057 6.0e-18 95.5 198 34.3
Medtr8g078690 Medicago truncatula HOM05D005122 ORTHO05D000920 1.3e-17 94.4 84 56.0
CBR_g48436 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-17 91.7 198 31.8
unitig_27.g24782 Utricularia gibba HOM05D005122 ORTHO05D006057 1.5e-16 90.9 111 45.0
Sc08g0009130 Simmondsia chinensis HOM05D005122 ORTHO05D006057 2.5e-16 90.1 103 47.6
CARHR289930 Cardamine hirsuta HOM05D005122 ORTHO05D006057 4.0e-14 82.8 80 48.8
Pp3c18_16020 Physcomitrium patens HOM05D005122 ORTHO05D006057 8.9e-14 81.6 191 28.8
Actinidia30254 Actinidia chinensis HOM05D005122 ORTHO05D006057 1.6e-07 60.8 101 39.6
SMO228G0085 Selaginella moellendorffii HOM05D005122 ORTHO05D006057 1.1e-06 58.2 110 30.9


User provided reference genes

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