Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1562.0 771 100.0
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1555.4 771 99.5
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1394.4 771 86.0
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 0.0e+00 1390.2 771 86.3
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1384.0 771 85.9
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 0.0e+00 1380.9 771 87.0
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 0.0e+00 1363.2 771 84.4
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 0.0e+00 1335.1 771 83.4
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 0.0e+00 1331.6 755 84.6
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 0.0e+00 1319.7 802 80.4
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 0.0e+00 1300.8 772 82.1
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 0.0e+00 1292.3 774 78.2
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 0.0e+00 1278.8 769 79.2
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 0.0e+00 1276.9 770 77.4
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 0.0e+00 1276.5 772 77.8
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 0.0e+00 1272.3 769 77.6
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 0.0e+00 1264.6 755 78.1
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 0.0e+00 1264.2 769 77.0
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1259.2 770 76.9
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 0.0e+00 1256.9 770 76.6
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1256.9 770 76.6
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1248.8 770 76.5
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1247.3 770 76.0
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1246.9 769 76.2
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1243.4 770 76.5
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 0.0e+00 1243.4 770 76.6
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1243.4 770 75.8
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 0.0e+00 1239.2 774 75.5
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 0.0e+00 1238.8 770 75.2
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 0.0e+00 1238.0 770 76.9
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1238.0 770 75.5
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1236.5 772 75.4
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 0.0e+00 1236.1 769 75.7
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 0.0e+00 1234.6 770 75.2
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1231.5 769 74.8
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 0.0e+00 1221.8 771 74.4
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1216.1 769 73.6
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 0.0e+00 1212.6 770 74.0
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1212.2 755 77.0
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1211.8 769 73.9
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 0.0e+00 1205.7 755 74.2
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 0.0e+00 1199.1 769 75.0
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 0.0e+00 1197.6 756 73.7
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1192.9 770 73.8
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1192.9 770 73.8
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 0.0e+00 1191.8 770 74.8
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 0.0e+00 1190.3 771 74.1
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1189.9 772 73.6
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1187.2 770 73.6
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 0.0e+00 1184.5 770 72.6
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 0.0e+00 1182.9 768 72.0
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 0.0e+00 1181.0 769 72.0
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 0.0e+00 1176.0 770 71.9
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 0.0e+00 1174.8 769 71.4
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 0.0e+00 1174.5 770 71.7
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1172.9 770 72.9
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 0.0e+00 1172.5 787 70.4
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1172.5 755 72.3
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1172.1 755 72.6
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 0.0e+00 1171.8 770 71.7
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 0.0e+00 1170.6 755 72.3
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 0.0e+00 1164.8 769 71.8
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 0.0e+00 1162.9 756 72.6
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 0.0e+00 1159.8 769 71.9
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1158.7 774 70.9
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1153.3 768 71.9
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1152.5 694 77.8
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1147.9 770 71.7
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1146.0 755 74.3
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1145.6 773 70.1
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 0.0e+00 1145.6 755 69.9
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1142.1 771 71.9
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 0.0e+00 1138.3 781 69.8
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1136.7 596 89.4
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 0.0e+00 1135.9 792 68.6
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 0.0e+00 1132.1 810 66.8
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1131.7 755 70.9
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 0.0e+00 1130.5 769 69.2
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1127.1 796 68.1
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1122.8 705 74.8
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 0.0e+00 1122.8 769 70.5
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 0.0e+00 1121.7 743 69.7
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1116.7 772 69.3
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 0.0e+00 1115.9 658 79.0
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1115.5 772 68.9
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1096.6 769 67.8
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 0.0e+00 1088.6 758 68.9
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 0.0e+00 1084.7 759 67.7
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 0.0e+00 1078.2 749 68.9
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 0.0e+00 1075.5 752 68.6
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 0.0e+00 1075.5 752 68.6
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 0.0e+00 1075.5 773 66.9
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 5.3e-312 1074.3 758 67.5
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 5.3e-312 1073.5 752 68.6
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 2.6e-311 1071.6 752 68.4
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 7.9e-311 1070.1 749 68.6
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 2.3e-310 1068.5 749 68.2
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 4.0e-310 1067.8 746 68.9
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 1.5e-309 1065.8 770 66.0
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 2.6e-309 1065.1 771 65.5
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 7.5e-309 1063.5 751 68.0
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 7.5e-309 1063.5 746 68.8
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 2.9e-308 1061.6 743 69.4
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 5.2e-302 1040.8 786 63.2
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 2.1e-298 1028.9 596 79.2
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 3.0e-297 1025.0 758 63.1
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 6.2e-295 1017.3 754 63.0
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 2.0e-293 1012.3 759 63.4
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 2.6e-293 1011.9 744 66.1
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 3.8e-292 1008.1 761 63.6
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 2.7e-290 1001.9 629 73.9
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 4.3e-288 994.6 778 63.0
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 4.8e-279 964.5 763 60.8
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 7.6e-277 957.2 763 60.4
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 3.4e-269 931.8 552 77.4
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 5.8e-269 931.0 713 64.4
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 4.8e-263 911.4 597 68.5
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 7.6e-261 904.0 546 76.4
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.4e-238 830.1 557 67.0
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 4.5e-237 825.1 572 68.5
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 1.1e-235 820.5 568 65.1
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 8.0e-226 787.7 561 67.0
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 9.8e-216 754.2 553 64.2
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 9.5e-211 737.6 602 57.0
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 1.0e-201 707.6 791 46.9
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 7.0e-198 694.9 608 55.3
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 1.8e-145 520.8 781 40.3
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 3.6e-117 426.8 382 54.2
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.2e-75 288.9 187 73.8
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 1.5e-67 261.9 264 53.8
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 3.2e-65 254.2 223 59.6
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 4.3e-46 190.7 284 45.1
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 8.1e-45 186.4 661 24.5
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 5.1e-39 167.2 642 23.4
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 6.7e-31 140.2 266 36.1
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 7.1e-25 120.2 117 53.0
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 3.7e-21 107.8 105 55.2
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 8.2e-21 106.7 216 38.0
HPP92_002921 Vanilla planifolia HOM05D005085 ORTHO05D006135 2.0e-19 102.1 52 84.6
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 7.7e-19 100.1 57 82.5
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 1.3e-18 99.4 57 82.5
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 2.9e-18 98.2 65 73.8
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 3.2e-17 94.7 46 91.3
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 3.2e-17 94.7 46 91.3
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 7.9e-16 90.1 113 46.0
Lj1C1016T12 Lonicera japonica HOM05D005085 ORTHO05D006135 1.4e-12 79.3 131 40.5
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 5.3e-12 77.4 230 26.5
QL06p014983 Quercus lobata HOM05D003117 ORTHO05D003612 5.9e-11 73.9 337 22.8
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 1.0e-10 73.2 259 21.6
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 2.2e-10 72.0 34 91.2
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 3.8e-10 71.2 297 23.2
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 5.0e-10 70.9 40 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3095 Anthoceros agrestis HOM05D003475 ORTHO05D026663 8.5e-10 70.1 246 22.8
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 8.5e-10 70.1 224 25.9
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 2.5e-09 68.6 215 28.8
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 4.2e-09 67.8 255 23.9
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 2.1e-08 65.5 311 24.4
Lsat_1_v5_gn_1_54780 Lactuca sativa HOM05D003475 ORTHO05D004155 1.0e-07 63.2 275 24.0
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 1.4e-07 62.8 269 23.8
unitig_748.g8538 Utricularia gibba HOM05D005085 ORTHO05D006135 3.0e-07 61.6 43 62.8
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 5.1e-07 60.8 282 22.7
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 6.7e-07 60.5 264 23.5
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 6.7e-07 60.5 255 22.0
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 6.7e-07 60.5 218 22.9
CDE06G0513 Ceratophyllum demersum HOM05D003475 ORTHO05D004155 1.1e-06 59.7 279 22.9
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.1e-06 59.7 214 23.4
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.5e-06 59.3 201 26.9
DCAR_008786 Daucus carota HOM05D003475 ORTHO05D004155 2.0e-06 58.9 263 23.6
Eucgr.F00025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 2.6e-06 58.5 320 23.4
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 2.6e-06 58.5 243 25.1
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 2.6e-06 58.5 263 22.8
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 4.4e-06 57.8 217 22.1
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 5.7e-06 57.4 201 26.4
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 7.4e-06 57.0 251 25.5
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 7.4e-06 57.0 251 22.3
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 9.7e-06 56.6 264 24.2
Hma1.2p1_0260F.1_g104710 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 9.7e-06 56.6 264 22.3


User provided reference genes

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