Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T9CDYU Arachis hypogaea HOM05D001578 ORTHO05D001207 2.3e-93 345.5 173 100.0
arahy.Tifrunner.gnm1.ann1.Q5N9NX Arachis hypogaea HOM05D001578 ORTHO05D001207 1.9e-66 256.1 173 72.8
arahy.Tifrunner.gnm1.ann1.HZ07NS Arachis hypogaea HOM05D001578 ORTHO05D001207 1.3e-51 206.8 126 77.8
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.3e-22 110.5 174 34.5
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 2.2e-22 109.8 172 35.5
VMungo1215G1199 Vigna mungo HOM05D001578 ORTHO05D001207 2.2e-22 109.8 174 35.1
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 3.7e-22 109.0 167 35.9
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 8.2e-22 107.8 172 33.7
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 7.0e-21 104.8 164 34.8
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 3.5e-20 102.4 169 31.4
Psat0s740g0160 Pisum sativum HOM05D001578 ORTHO05D001207 7.7e-20 101.3 172 30.8
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 3.8e-19 99.0 167 32.9
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 8.5e-19 97.8 164 32.9
Psat0s4829g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.1e-18 97.4 164 33.5
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 1.9e-18 96.7 176 32.4
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 3.2e-18 95.9 160 32.5
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 3.2e-18 95.9 170 33.5
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 3.2e-18 95.9 172 33.7
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.6e-17 93.6 164 32.9
Psat0s2818g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.6e-17 93.6 164 34.8
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 2.1e-17 93.2 168 31.0
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 3.6e-17 92.4 169 33.7
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 4.7e-17 92.0 164 32.9
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 4.7e-17 92.0 164 32.9
Lj6g0013229 Lotus japonicus HOM05D001578 ORTHO05D001207 4.7e-17 92.0 169 30.8
RcHm_v2.0_Chr4g0426481 Rosa chinensis HOM05D001578 ORTHO05D001207 6.1e-17 91.7 147 38.1
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 6.1e-17 91.7 168 30.4
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 8.0e-17 91.3 149 32.9
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.0e-16 90.9 164 31.7
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 1.8e-16 90.1 177 32.8
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 1.8e-16 90.1 164 31.7
Medtr4g122760 Medicago truncatula HOM05D001578 ORTHO05D001207 3.0e-16 89.4 173 30.6
Phvul.003G117200 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.0e-16 89.4 168 31.0
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 4.0e-16 89.0 145 31.0
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 5.2e-16 88.6 176 29.5
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 6.8e-16 88.2 146 33.6
FvH4_1g05890 Fragaria vesca HOM05D001578 ORTHO05D001207 6.8e-16 88.2 147 37.4
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 6.8e-16 88.2 167 32.9
TPR.G25397 Trifolium pratense HOM05D001578 ORTHO05D001207 6.8e-16 88.2 144 34.0
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.0e-15 86.7 147 30.6
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 3.4e-15 85.9 179 31.8
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 3.4e-15 85.9 167 30.5
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.4e-15 85.5 147 30.6
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 4.4e-15 85.5 147 30.6
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 4.4e-15 85.5 149 30.9
Medtr4g122800 Medicago truncatula HOM05D001578 ORTHO05D001207 4.4e-15 85.5 144 33.3
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 5.7e-15 85.1 144 34.0
FAN07G2152 Fragaria x ananassa HOM05D001578 ORTHO05D001207 5.7e-15 85.1 172 30.2
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 7.5e-15 84.7 170 32.4
Psat0s2823g0080 Pisum sativum HOM05D001578 ORTHO05D001207 7.5e-15 84.7 167 34.1
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 7.5e-15 84.7 161 28.6
FvH4_4g20440 Fragaria vesca HOM05D001578 ORTHO05D001207 9.8e-15 84.3 172 30.2
FAN12G2021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 9.8e-15 84.3 172 30.2
Glyma.20G028900 Glycine max HOM05D001578 ORTHO05D001207 9.8e-15 84.3 176 29.0
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 1.7e-14 83.6 171 29.2
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 2.2e-14 83.2 172 32.6
Glyma.20G029200 Glycine max HOM05D001578 ORTHO05D001207 2.8e-14 82.8 176 28.4
Actinidia18466 Actinidia chinensis HOM05D001578 ORTHO05D001207 4.8e-14 82.0 148 33.1
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 6.3e-14 81.6 170 27.6
Glyma.20G028700 Glycine max HOM05D001578 ORTHO05D001207 1.1e-13 80.9 148 32.4
MD03G1249700 Malus domestica HOM05D001578 ORTHO05D001207 1.1e-13 80.9 147 32.0
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 1.4e-13 80.5 168 29.2
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.4e-13 80.5 168 29.2
Glyma.20G029500 Glycine max HOM05D001578 ORTHO05D001207 1.4e-13 80.5 176 27.8
Psat4g021360 Pisum sativum HOM05D001578 ORTHO05D001207 1.4e-13 80.5 164 28.7
FvH4_6g33790 Fragaria vesca HOM05D001578 ORTHO05D001207 2.4e-13 79.7 147 32.7
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 2.4e-13 79.7 160 30.0
TWI53G0804 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 2.4e-13 79.7 164 29.3
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.1e-13 79.3 151 31.8
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 3.1e-13 79.3 151 31.8
Lj1g0019408 Lotus japonicus HOM05D001578 ORTHO05D001207 4.1e-13 79.0 173 29.5
MD03G1249600 Malus domestica HOM05D001578 ORTHO05D001207 4.1e-13 79.0 149 32.2
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 4.1e-13 79.0 149 29.5
FAN02G2223 Fragaria x ananassa HOM05D001578 ORTHO05D001207 9.1e-13 77.8 169 32.0
Glyma.20G029000 Glycine max HOM05D001578 ORTHO05D001207 9.1e-13 77.8 148 30.4
MD03G1248700 Malus domestica HOM05D001578 ORTHO05D001207 9.1e-13 77.8 149 31.5
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.2e-12 77.4 176 31.2
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.2e-12 77.4 176 31.2
Duzib151G0004 Durio zibethinus HOM05D001578 ORTHO05D001207 1.6e-12 77.0 148 31.8
MD03G1250000 Malus domestica HOM05D001578 ORTHO05D001207 1.6e-12 77.0 149 30.9
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 2.0e-12 76.6 145 30.3
Lj1g0016642 Lotus japonicus HOM05D001578 ORTHO05D001207 2.7e-12 76.3 179 27.9
Lalb_Chr13g0298621 Lupinus albus HOM05D001578 ORTHO05D001207 2.7e-12 76.3 170 34.7
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 3.5e-12 75.9 145 29.7
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 3.5e-12 75.9 156 28.2
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 3.5e-12 75.9 151 30.5
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 4.5e-12 75.5 161 29.2
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 7.7e-12 74.7 149 30.2
Migut.N00031 Erythranthe guttata HOM05D001578 ORTHO05D001207 1.0e-11 74.3 165 28.5
Hma1.2p1_0078F.1_g039850 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 1.3e-11 73.9 166 29.5
Hma1.2p1_1400F.1_g280915 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 1.3e-11 73.9 166 29.5
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.3e-11 73.9 158 27.2
MSTRG.16314 Avicennia marina HOM05D001578 ORTHO05D001207 2.2e-11 73.2 149 32.2
DCAR_023358 Daucus carota HOM05D001578 ORTHO05D001207 2.2e-11 73.2 171 26.9
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 2.2e-11 73.2 173 30.1
Lj4g0019348 Lotus japonicus HOM05D001578 ORTHO05D001207 3.8e-11 72.4 180 28.9
TPR.G25399 Trifolium pratense HOM05D001578 ORTHO05D001207 3.8e-11 72.4 170 33.5
Gorai.011G202200 Gossypium raimondii HOM05D001578 ORTHO05D001207 8.5e-11 71.2 146 27.4
CARHR037580 Cardamine hirsuta HOM05D001578 ORTHO05D001207 1.1e-10 70.9 150 28.7
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 1.1e-10 70.9 171 29.2
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 1.1e-10 70.9 171 29.2
BcaB07g33804 Brassica carinata HOM05D001578 ORTHO05D001207 1.5e-10 70.5 151 29.1
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 1.5e-10 70.5 177 26.6
Lalb_Chr13g0298661 Lupinus albus HOM05D001578 ORTHO05D001207 1.5e-10 70.5 170 33.5
A06p04790 Brassica napus HOM05D001578 ORTHO05D001207 1.9e-10 70.1 160 26.2
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 1.9e-10 70.1 176 27.8
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.9e-10 70.1 169 26.0
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.9e-10 70.1 169 26.0
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.9e-10 70.1 169 26.0
Lalb_Chr13g0298631 Lupinus albus HOM05D001578 ORTHO05D001207 1.9e-10 70.1 170 33.5
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 2.5e-10 69.7 172 27.9
BraA06t23683Z Brassica rapa HOM05D001578 ORTHO05D001207 3.2e-10 69.3 160 26.2
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 3.2e-10 69.3 179 27.4
Thecc.04G304900 Theobroma cacao HOM05D001578 ORTHO05D001207 3.2e-10 69.3 116 31.9
AL1G54460 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 4.2e-10 68.9 150 29.3
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 4.2e-10 68.9 164 26.8
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 5.5e-10 68.6 166 27.7
Gohir.A10G174100 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.5e-10 68.6 146 26.0
Gohir.D10G180700 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.5e-10 68.6 146 26.7
MD13G1149700 Malus domestica HOM05D001578 ORTHO05D001207 5.5e-10 68.6 170 27.6
Peaxi162Scf00228g00064 Petunia axillaris HOM05D001578 ORTHO05D001207 5.5e-10 68.6 148 29.1
Prupe.5G112600 Prunus persica HOM05D001578 ORTHO05D001207 5.5e-10 68.6 147 29.3
Carub.0001s3704 Capsella rubella HOM05D001578 ORTHO05D001207 7.2e-10 68.2 166 27.1
Lalb_Chr13g0298611 Lupinus albus HOM05D001578 ORTHO05D001207 7.2e-10 68.2 155 32.9
MD16G1150600 Malus domestica HOM05D001578 ORTHO05D001207 7.2e-10 68.2 112 33.0
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 7.2e-10 68.2 164 26.8
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 7.2e-10 68.2 164 26.8
BcaC08g42990 Brassica carinata HOM05D001578 ORTHO05D001207 9.4e-10 67.8 148 27.0
C06p02320 Brassica napus HOM05D001578 ORTHO05D001207 9.4e-10 67.8 148 27.0
BolC6t35358H Brassica oleracea HOM05D001578 ORTHO05D001207 9.4e-10 67.8 148 27.0
Cc03_g00600 Coffea canephora HOM05D001578 ORTHO05D001207 9.4e-10 67.8 187 26.2
PGR031G2424 Punica granatum HOM05D001578 ORTHO05D001207 1.2e-09 67.4 176 29.5
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 1.6e-09 67.0 174 28.7
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 2.1e-09 66.6 147 28.6
MD13G1150300 Malus domestica HOM05D001578 ORTHO05D001207 2.1e-09 66.6 154 30.5
HanXRQChr13g0395171 Helianthus annuus HOM05D001578 ORTHO05D001207 2.7e-09 66.2 178 25.8
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 3.6e-09 65.9 170 28.8
Gohir.A10G174050 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.6e-09 65.9 151 29.8
Atru.chr4.3056 Acer truncatum HOM05D001578 ORTHO05D001207 4.7e-09 65.5 144 25.0
FvH4_4g14140 Fragaria vesca HOM05D001578 ORTHO05D001207 4.7e-09 65.5 144 34.0
Psat0s740g0040 Pisum sativum HOM05D001578 ORTHO05D001207 8.0e-09 64.7 149 26.8
AT1G47960 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 1.0e-08 64.3 146 28.8
Ciclev10006511m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.4e-08 63.9 169 28.4
Migut.N00030 Erythranthe guttata HOM05D001578 ORTHO05D001207 1.4e-08 63.9 131 29.8
Medtr4g007280 Medicago truncatula HOM05D001578 ORTHO05D001207 1.4e-08 63.9 86 40.7
Atru.chr4.3057 Acer truncatum HOM05D001578 ORTHO05D001207 4.0e-08 62.4 144 24.3
CAN.G305.59 Capsicum annuum HOM05D001578 ORTHO05D001207 4.0e-08 62.4 146 28.1
HanXRQChr13g0395211 Helianthus annuus HOM05D001578 ORTHO05D001207 4.0e-08 62.4 178 25.8
Ca_21411_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 5.2e-08 62.0 103 30.1
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 5.2e-08 62.0 170 25.9
PGR004G1767 Punica granatum HOM05D001578 ORTHO05D001207 5.2e-08 62.0 173 26.0
RcHm_v2.0_Chr3g0482891 Rosa chinensis HOM05D001578 ORTHO05D001207 6.8e-08 61.6 170 27.6
Sopen12g033880 Solanum pennellii HOM05D001578 ORTHO05D001207 6.8e-08 61.6 151 25.8
PGSC0003DMG400004618 Solanum tuberosum HOM05D001578 ORTHO05D001207 1.2e-07 60.8 147 27.2
Psat4g021520 Pisum sativum HOM05D001578 ORTHO05D001207 1.5e-07 60.5 149 29.5
Eucgr.H04067 Eucalyptus grandis HOM05D001578 ORTHO05D001207 2.0e-07 60.1 180 28.9
FvH4_4g20430 Fragaria vesca HOM05D001578 ORTHO05D001207 2.0e-07 60.1 147 28.6
FAN07G2406 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.6e-07 59.7 188 30.3
PGSC0003DMG400004617 Solanum tuberosum HOM05D001578 ORTHO05D001207 3.4e-07 59.3 151 25.2
CAN.G484.68 Capsicum annuum HOM05D001578 ORTHO05D001207 7.5e-07 58.2 153 26.1
FAN17G3031 Fragaria x ananassa HOM05D016496 ORTHO05D001207 7.5e-07 58.2 176 29.5
RcHm_v2.0_Chr4g0432401 Rosa chinensis HOM05D001578 ORTHO05D001207 7.5e-07 58.2 158 31.0
Solyc12g099200.2 Solanum lycopersicum HOM05D001578 ORTHO05D001207 7.5e-07 58.2 168 23.2
TPR.G20932 Trifolium pratense HOM05D001578 ORTHO05D001207 7.5e-07 58.2 174 29.9
DCAR_028534 Daucus carota HOM05D004113 ORTHO05D005233 9.8e-07 57.8 174 25.9
Solyc12g099210.2 Solanum lycopersicum HOM05D001578 ORTHO05D001207 9.8e-07 57.8 147 26.5
CAN.G1359.1 Capsicum annuum HOM05D001578 ORTHO05D001207 2.2e-06 56.6 149 27.5
SalBow8G1966 Salvia bowleyana HOM05D001578 ORTHO05D001207 2.2e-06 56.6 150 25.3
SalBow8G3310 Salvia bowleyana HOM05D001578 ORTHO05D001207 2.2e-06 56.6 150 25.3
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.7e-06 55.8 173 28.9
TPR.G25400 Trifolium pratense HOM05D001578 ORTHO05D001207 3.7e-06 55.8 61 42.6
FvH4_4g24940 Fragaria vesca HOM05D016496 ORTHO05D001207 4.9e-06 55.5 174 28.2
Phvul.003G116500 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 4.9e-06 55.5 171 21.1
Ah.08g216400 Amaranthus hybridus HOM05D001578 ORTHO05D001207 6.3e-06 55.1 143 25.9
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 6.3e-06 55.1 118 23.7


User provided reference genes

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