Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 3.2e-270 934.5 474 100.0
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.3e-266 922.5 474 98.3
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 7.9e-200 700.7 477 74.4
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.2e-195 686.8 474 72.4
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 4.9e-194 681.4 474 72.4
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 6.5e-194 681.0 477 73.0
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 2.5e-190 669.1 474 71.5
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 7.4e-190 667.5 475 70.7
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 5.5e-185 651.4 473 70.0
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.2e-184 650.2 476 69.3
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 3.9e-183 645.2 464 68.3
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 5.3e-180 634.8 465 66.9
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.0e-178 630.6 477 67.3
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.3e-178 630.2 465 66.2
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.6e-176 623.2 464 66.4
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.6e-176 623.2 476 68.7
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 5.1e-175 618.2 462 65.2
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.5e-171 606.7 461 64.9
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.6e-171 605.9 464 63.1
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 5.0e-170 601.7 466 66.5
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 8.5e-170 600.9 464 64.9
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.4e-169 600.1 464 65.5
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 9.4e-169 597.4 461 64.2
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.2e-168 597.0 465 65.4
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 5.2e-167 591.7 468 64.1
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 2.6e-166 589.3 464 62.3
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.4e-164 582.8 461 61.6
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 9.1e-164 580.9 466 62.0
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 2.6e-163 579.3 468 63.5
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.5e-163 578.6 461 61.2
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.9e-162 575.9 464 61.4
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.9e-162 575.9 464 61.4
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 3.8e-162 575.5 513 57.7
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 5.0e-162 575.1 464 61.2
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.9e-161 573.2 464 61.9
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.9e-161 573.2 462 62.3
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 5.5e-161 571.6 464 60.8
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.7e-160 568.5 468 62.6
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 4.7e-160 568.5 462 61.0
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.0e-159 567.4 459 63.0
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 4.0e-159 565.5 464 59.9
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.5e-158 563.5 465 61.1
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 3.3e-158 562.4 464 60.1
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.1e-156 555.8 462 60.4
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 5.3e-156 555.1 466 56.9
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 9.1e-156 554.3 463 59.2
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.2e-155 553.9 464 59.1
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.5e-155 552.4 466 59.4
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.7e-154 550.1 461 58.4
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 3.2e-153 545.8 466 56.7
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 2.7e-152 542.7 465 58.5
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 2.3e-151 539.7 422 64.0
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 4.0e-151 538.9 498 55.8
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 5.7e-150 535.0 462 58.2
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.3e-149 533.9 462 56.3
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.3e-149 531.6 433 62.6
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 6.3e-149 531.6 465 55.9
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.1e-148 530.8 467 56.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.4e-148 530.4 464 57.5
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.8e-148 530.0 433 62.4
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 2.4e-148 529.6 466 56.9
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 9.1e-148 527.7 464 57.1
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 3.5e-147 525.8 465 56.1
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 1.3e-146 523.9 467 57.0
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.3e-146 523.9 466 56.7
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 2.3e-146 523.1 465 56.1
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 3.8e-146 522.3 465 55.7
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 5.0e-146 521.9 464 55.8
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 8.6e-146 521.2 464 55.8
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.1e-145 520.8 466 56.2
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 1.1e-145 520.8 466 56.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 4.2e-145 518.8 466 56.0
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 5.5e-145 518.5 465 55.9
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 7.2e-145 518.1 466 56.4
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 2.8e-144 516.2 462 56.1
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.4e-143 513.8 467 54.8
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.0e-143 512.7 462 55.8
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 5.2e-143 511.9 463 55.5
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.5e-142 510.4 471 56.1
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.3e-141 507.3 463 55.9
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.7e-141 506.9 466 53.6
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.7e-141 506.9 463 55.1
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 3.7e-141 505.8 469 55.2
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.8e-140 503.4 464 54.1
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 5.4e-140 501.9 461 56.2
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 9.2e-140 501.1 464 55.4
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 2.0e-139 500.0 465 54.6
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 7.3e-137 491.5 469 55.2
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.3e-135 486.5 466 53.4
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.6e-134 483.0 466 53.2
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 3.4e-134 482.6 469 54.6
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.3e-133 480.7 424 55.9
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 5.9e-131 471.9 468 49.8
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 2.3e-130 469.9 421 56.1
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 3.7e-125 452.6 469 51.2
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.3e-122 444.1 443 51.0
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.5e-121 439.9 467 48.4
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 5.2e-119 432.2 433 54.7
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 5.2e-119 432.2 494 45.5
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.5e-118 430.6 459 47.7
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 5.4e-116 422.2 450 49.6
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 4.3e-113 412.5 467 46.0
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.1e-111 407.9 492 45.7
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 5.8e-110 402.1 452 47.3
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 9.6e-97 358.2 428 43.5
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 4.8e-96 355.9 296 60.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 3.5e-91 339.7 370 48.9
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.5e-91 339.7 370 48.9
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.8e-90 337.4 283 57.6
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 8.2e-80 302.0 369 46.6
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 4.0e-79 299.7 442 38.2
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.2e-78 298.1 527 35.3
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.3e-77 294.7 502 35.1
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.8e-63 247.7 325 45.5
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 3.2e-60 236.9 526 31.9
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 3.9e-58 229.9 500 31.4
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.2e-43 181.8 192 49.0
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.8e-42 177.9 359 30.1
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 6.7e-42 176.0 364 32.4
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 2.7e-38 164.1 162 49.4
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 3.5e-38 163.7 117 68.4
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 1.0e-37 162.2 128 61.7
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.0e-37 162.2 162 49.4
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.7e-35 154.1 127 56.7
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.7e-35 154.1 127 56.7
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.8e-34 149.4 124 56.5
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 9.8e-33 145.6 215 42.3
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.0e-30 137.9 101 63.4
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.7e-30 137.5 351 26.8
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 3.5e-30 137.1 355 27.6
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.9e-29 134.0 230 35.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.8e-23 114.8 275 28.0
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.8e-18 98.2 124 38.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 8.3e-16 89.4 172 33.7
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 8.6e-13 79.3 88 44.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.5e-12 78.6 88 44.3
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.2e-11 73.2 66 54.5
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 4.9e-08 63.5 73 42.5
Zm00001eb301930 Zea mays HOM05D005294 ORTHO05D006720 4.1e-07 60.5 104 38.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 2.7e-06 57.8 46 58.7


User provided reference genes

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