Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 4.1e-41 171.0 89 100.0
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 5.0e-31 137.5 71 98.6
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 5.0e-31 137.5 71 98.6
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 4.1e-17 91.3 77 67.5
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 4.1e-17 91.3 77 67.5
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 5.4e-17 90.9 50 94.0
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.6e-16 89.4 77 64.9
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.0e-16 89.0 77 66.2
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.7e-16 88.6 77 64.9
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.7e-16 88.6 77 64.9
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 2.7e-16 88.6 77 64.9
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 2.7e-16 88.6 77 64.9
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 3.5e-16 88.2 50 94.0
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 3.5e-16 88.2 77 64.9
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 4.5e-16 87.8 77 63.6
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 5.9e-16 87.4 77 64.9
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 5.9e-16 87.4 77 62.3
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.3e-15 86.3 77 66.2
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.7e-15 85.9 77 66.2
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.5e-14 82.8 77 62.3
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 2.5e-14 82.0 77 62.3
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 3.3e-14 81.6 77 63.6
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 2.1e-13 79.0 77 59.7
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 2.8e-13 78.6 70 64.3
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 2.8e-13 78.6 70 61.4
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 4.7e-13 77.8 77 57.1
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 4.7e-13 77.8 70 61.4
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 4.7e-13 77.8 78 56.4
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.7e-13 77.8 78 56.4
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.7e-13 77.8 78 56.4
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 8.0e-13 77.0 77 57.1
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 8.0e-13 77.0 70 65.7
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 8.0e-13 77.0 70 65.7
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 8.0e-13 77.0 70 65.7
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 8.0e-13 77.0 70 65.7
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 8.0e-13 77.0 70 65.7
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 8.0e-13 77.0 70 65.7
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 8.0e-13 77.0 77 59.7
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.0e-12 76.6 76 57.9
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.0e-12 76.6 77 57.1
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.4e-12 76.3 70 65.7
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.4e-12 76.3 72 62.5
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 1.4e-12 76.3 79 58.2
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.4e-12 76.3 77 54.5
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.4e-12 76.3 70 61.4
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 1.8e-12 75.9 77 58.4
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 2.3e-12 75.5 77 62.3
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.3e-12 75.5 70 60.0
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 2.3e-12 75.5 79 59.5
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 3.0e-12 75.1 70 62.9
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 3.0e-12 75.1 70 62.9
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 3.0e-12 75.1 75 57.3
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 4.0e-12 74.7 77 53.2
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 5.2e-12 74.3 81 58.0
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 6.8e-12 73.9 77 55.8
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 6.8e-12 73.9 75 58.7
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 8.9e-12 73.6 77 57.1
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 8.9e-12 73.6 73 58.9
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 8.9e-12 73.6 76 55.3
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 1.2e-11 73.2 70 62.9
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 1.2e-11 73.2 78 53.8
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 1.2e-11 73.2 71 59.2
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.5e-11 72.8 71 59.2
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.5e-11 72.8 74 58.1
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.5e-11 72.8 76 55.3
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.5e-11 72.8 76 55.3
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 1.5e-11 72.8 76 55.3
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.5e-11 72.8 70 57.1
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.0e-11 72.4 70 60.0
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 2.0e-11 72.4 80 56.2
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 2.6e-11 72.0 74 58.1
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 2.6e-11 72.0 76 56.6
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.6e-11 72.0 75 56.0
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.6e-11 72.0 75 56.0
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 2.6e-11 72.0 71 63.4
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 2.6e-11 72.0 73 57.5
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 2.6e-11 72.0 76 56.6
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 3.4e-11 71.6 77 57.1
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 4.4e-11 71.2 78 55.1
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 5.7e-11 70.9 80 53.8
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 7.5e-11 70.5 77 53.2
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 9.8e-11 70.1 77 54.5
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 9.8e-11 70.1 78 59.0
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 9.8e-11 70.1 81 53.1
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 1.3e-10 69.7 71 62.0
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.3e-10 69.7 71 62.0
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 1.7e-10 69.3 79 54.4
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.7e-10 69.3 76 50.0
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 3.7e-10 68.2 81 55.6
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 6.3e-10 67.4 77 54.5
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 8.3e-10 67.0 77 50.6
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.4e-09 66.2 77 53.2
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.4e-09 65.5 73 57.5
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 3.1e-09 65.1 77 53.2
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 3.1e-09 65.1 77 51.9
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 4.1e-09 64.7 76 51.3
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 5.4e-09 64.3 77 51.9
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 5.4e-09 64.3 77 51.9
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 5.4e-09 64.3 78 53.8
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 5.4e-09 64.3 77 50.6
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 7.0e-09 63.9 76 48.7
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 7.0e-09 63.9 71 59.2
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.0e-09 63.9 73 57.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.2e-08 63.2 71 54.9
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.2e-08 63.2 73 56.2
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 2.0e-08 62.4 76 48.7
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 2.7e-08 62.0 71 53.5
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.7e-08 62.0 80 47.5
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 4.5e-08 61.2 80 48.8
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 7.8e-08 60.5 83 45.8
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 7.8e-08 60.5 78 51.3
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 1.0e-07 60.1 71 50.7
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 2.3e-07 58.9 77 50.6
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.3e-07 58.9 73 53.4
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 6.6e-07 57.4 75 48.0
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 8.6e-07 57.0 77 42.9
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.1e-06 56.6 79 48.1
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 5.6e-06 54.3 83 45.8


User provided reference genes

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