Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 7.9e-205 716.8 351 100.0
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 8.1e-202 706.8 351 98.3
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 7.0e-161 570.9 350 79.1
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.3e-159 566.6 350 79.1
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 2.1e-157 559.3 355 76.6
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 4.0e-156 555.1 354 77.4
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 5.3e-153 544.7 349 76.2
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 1.8e-148 529.6 351 74.1
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 4.0e-148 528.5 352 75.0
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 7.5e-147 524.2 347 74.6
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.4e-145 520.0 350 72.0
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 3.1e-145 518.8 350 70.0
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.6e-144 516.5 353 72.0
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.0e-143 513.8 332 75.9
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 2.9e-143 512.3 352 71.3
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 5.0e-143 511.5 350 71.1
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.6e-141 506.5 350 68.0
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 8.0e-141 504.2 350 67.4
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 4.0e-140 501.9 349 69.1
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 8.9e-140 500.7 352 67.0
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 1.3e-138 496.9 351 68.7
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 3.7e-138 495.4 352 68.5
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 1.1e-137 493.8 340 70.3
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 1.4e-137 493.4 351 67.2
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.8e-137 493.0 351 67.5
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.8e-137 493.0 353 67.1
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 2.4e-137 492.7 340 69.7
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 3.2e-137 492.3 351 67.5
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 5.4e-137 491.5 351 68.7
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 5.4e-137 491.5 350 68.3
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 7.0e-137 491.1 353 67.1
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.2e-136 490.3 351 68.4
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.2e-136 490.3 349 67.0
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.2e-136 490.3 349 67.0
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 2.7e-136 489.2 351 66.4
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 3.5e-136 488.8 353 68.3
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 4.5e-136 488.4 353 69.4
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 5.9e-136 488.0 352 66.8
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.0e-135 487.3 350 66.9
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.3e-135 486.9 351 68.1
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.3e-135 486.9 349 67.3
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 1.7e-135 486.5 349 66.2
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.7e-135 486.5 349 67.0
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 3.9e-135 485.3 349 66.2
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 5.0e-135 485.0 350 66.6
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.1e-134 483.8 350 65.4
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.5e-134 483.4 352 66.2
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.5e-134 483.4 350 66.9
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.5e-134 483.4 351 67.5
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 2.5e-134 482.6 350 67.1
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.3e-134 482.3 349 66.8
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.8e-133 479.2 349 68.5
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.8e-133 479.2 349 68.2
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.0e-132 477.2 351 65.8
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.0e-132 477.2 350 66.6
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.8e-132 476.5 350 66.9
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 2.3e-132 476.1 352 67.0
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 3.1e-132 475.7 350 65.1
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 4.0e-132 475.3 350 64.0
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.0e-132 475.3 350 66.0
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 5.2e-132 474.9 381 61.4
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 6.8e-132 474.6 354 65.5
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.2e-131 473.8 355 65.9
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.2e-131 473.8 350 66.0
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 1.5e-131 473.4 349 65.9
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.0e-131 473.0 350 65.4
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 2.6e-131 472.6 301 74.1
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 5.8e-131 471.5 350 66.9
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 7.5e-131 471.1 351 63.8
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 2.9e-130 469.2 350 65.1
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 3.7e-130 468.8 350 66.0
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 4.9e-130 468.4 351 63.5
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 6.4e-130 468.0 356 65.2
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 6.4e-130 468.0 356 65.2
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 1.1e-129 467.2 352 65.1
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 1.4e-129 466.8 352 64.5
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.4e-129 466.8 350 64.6
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 2.4e-129 466.1 356 65.2
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 3.2e-129 465.7 347 64.3
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 5.4e-129 464.9 369 62.3
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 9.2e-129 464.2 351 64.7
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 4.6e-128 461.8 349 64.2
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 1.7e-127 459.9 359 63.8
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 2.3e-127 459.5 338 66.3
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 3.0e-127 459.1 344 63.1
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 1.5e-126 456.8 351 62.4
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.5e-126 456.8 382 60.2
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.5e-126 456.8 349 63.9
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 2.1e-125 453.0 352 63.9
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 4.7e-125 451.8 350 62.9
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 8.0e-125 451.1 345 62.6
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 3.1e-124 449.1 294 73.5
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 8.9e-124 447.6 321 66.0
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 1.5e-123 446.8 349 61.9
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 2.0e-123 446.4 329 65.7
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 7.5e-123 444.5 409 57.0
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 4.1e-121 438.7 349 61.6
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 5.4e-121 438.3 349 59.9
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 6.0e-120 434.9 350 61.7
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 4.3e-118 428.7 301 68.4
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.9e-114 416.0 246 74.4
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 4.9e-114 415.2 234 79.9
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 6.4e-114 414.8 246 74.4
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 4.1e-113 412.1 349 60.5
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 5.4e-113 411.8 329 61.1
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 8.6e-111 404.4 256 74.6
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 2.4e-100 369.8 307 59.0
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 9.0e-100 367.9 298 60.7
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 7.1e-97 358.2 329 56.8
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.6e-96 357.1 257 68.1
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 9.6e-94 347.8 232 70.7
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.1e-93 346.7 331 52.9
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 3.1e-84 316.2 244 61.5
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.0e-83 313.5 246 65.9
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.0e-83 313.5 246 65.9
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 3.4e-83 312.8 247 63.6
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 7.6e-83 311.6 245 62.9
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 2.3e-79 300.1 246 60.6
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 6.2e-77 292.0 329 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.2e-64 251.1 173 68.2
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.8e-63 247.3 246 49.6
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 3.6e-56 223.0 163 65.6
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 3.0e-55 219.9 199 54.3
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 6.7e-55 218.8 199 53.8
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 3.7e-53 213.0 183 54.6
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 1.9e-49 200.7 169 58.0
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.8e-45 186.0 161 58.4
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 2.0e-27 127.5 104 59.6
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 6.6e-26 122.5 73 75.3
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.3e-18 98.2 57 70.2
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 2.5e-09 67.4 53 60.4


User provided reference genes

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