Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 4.2e-237 824.3 417 100.0
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 7.6e-215 750.4 514 78.8
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.0e-214 750.0 489 81.0
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 5.2e-171 604.7 475 66.7
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 8.8e-171 604.0 452 69.5
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 2.6e-170 602.4 454 69.6
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.7e-166 589.7 464 67.7
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 3.2e-165 585.5 411 72.0
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 4.9e-161 571.6 454 65.9
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 6.3e-161 571.2 456 67.1
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 7.8e-151 537.7 417 66.9
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 8.6e-150 534.3 400 67.0
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 4.3e-149 531.9 420 65.5
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.6e-148 530.0 413 65.1
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.6e-148 528.9 394 67.5
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 3.6e-148 528.9 456 62.3
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 1.0e-147 527.3 414 64.0
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.0e-147 527.3 395 67.3
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.5e-146 523.5 452 60.6
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 1.3e-145 520.4 394 66.2
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 3.7e-145 518.8 394 66.0
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 1.1e-144 517.3 393 65.9
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.4e-144 516.2 409 63.6
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 5.4e-144 515.0 430 61.9
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 7.0e-144 514.6 404 64.9
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 2.7e-143 512.7 404 63.4
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.0e-142 510.8 394 65.2
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 2.3e-142 509.6 396 65.4
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 1.9e-141 506.5 401 63.3
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 1.2e-140 503.8 408 62.5
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 3.6e-140 502.3 402 62.2
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 2.3e-139 499.6 422 62.1
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 4.0e-139 498.8 399 63.2
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 6.8e-139 498.0 396 63.6
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 8.9e-139 497.7 422 61.4
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.2e-138 497.3 391 63.9
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 3.4e-138 495.7 399 63.4
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 4.4e-138 495.4 391 63.4
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 4.4e-138 495.4 414 62.1
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 2.2e-137 493.0 418 61.0
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 2.9e-137 492.7 412 61.4
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 2.9e-137 492.7 391 62.7
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.9e-137 492.7 408 61.0
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 2.9e-137 492.7 490 56.1
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 3.7e-137 492.3 393 64.1
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 4.9e-137 491.9 399 62.2
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 4.9e-137 491.9 433 60.3
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 6.4e-137 491.5 392 63.3
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 6.4e-137 491.5 396 63.6
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 6.4e-137 491.5 410 62.7
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.1e-136 490.7 399 61.9
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.1e-136 490.7 410 60.7
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 2.4e-136 489.6 427 58.5
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 3.2e-136 489.2 448 63.8
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 4.1e-136 488.8 399 62.2
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 6.6e-134 481.5 420 59.8
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 1.5e-133 480.3 399 63.4
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.2e-132 477.2 392 62.8
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 2.8e-132 476.1 401 61.8
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 6.8e-131 471.5 395 60.5
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 4.4e-130 468.8 405 59.0
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.4e-130 468.8 418 57.4
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 7.6e-130 468.0 395 60.5
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.7e-129 466.8 418 57.2
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 2.9e-129 466.1 395 60.0
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 3.8e-129 465.7 410 58.5
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 9.2e-128 461.1 395 59.2
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.6e-127 460.3 395 59.5
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 2.7e-127 459.5 391 60.1
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 3.5e-127 459.1 410 57.3
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 6.0e-127 458.4 395 59.5
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 6.0e-127 458.4 395 59.5
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.3e-126 457.2 395 59.0
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 1.3e-126 457.2 393 58.8
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 6.6e-126 454.9 413 56.9
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 8.6e-126 454.5 395 58.2
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 1.1e-125 454.1 412 58.7
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.2e-124 450.7 431 55.7
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 2.1e-124 449.9 449 53.7
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 1.8e-123 446.8 445 53.3
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.2e-122 444.1 417 57.1
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 7.6e-122 441.4 394 58.4
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 2.9e-121 439.5 426 54.7
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.1e-120 437.6 301 69.8
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 5.4e-120 435.3 391 59.6
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.2e-119 434.1 381 58.3
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 3.5e-119 432.6 365 61.4
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 3.9e-118 429.1 370 60.8
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 2.7e-111 406.4 303 65.3
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 8.7e-110 401.4 280 70.7
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.8e-107 393.7 389 54.2
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 2.0e-106 390.2 413 49.6
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 9.3e-104 381.3 302 60.3
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 3.9e-102 375.9 214 81.8
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.3e-97 360.9 314 59.9
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 6.5e-97 358.6 312 58.0
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 1.1e-96 357.8 289 61.2
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.1e-96 357.8 289 61.2
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.7e-95 353.2 317 57.4
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 2.7e-95 353.2 290 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 2.3e-94 350.1 408 47.1
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.0e-94 349.7 327 58.1
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 6.3e-92 342.0 237 68.8
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 4.2e-88 329.3 236 67.4
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 6.1e-87 325.5 370 48.1
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 6.7e-86 322.0 294 56.1
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.1e-85 321.2 415 45.5
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 1.3e-81 307.8 336 50.0
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 6.5e-81 305.4 306 52.6
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.3e-76 291.2 187 73.3
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 7.7e-74 282.0 208 65.9
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 1.4e-70 271.2 486 37.7
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.0e-54 218.4 149 69.1
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 1.0e-41 175.3 250 40.0
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 2.3e-38 164.1 141 63.8
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 2.2e-36 157.5 170 55.3
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.9e-36 157.1 419 34.4
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 5.0e-33 146.4 147 55.1
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.4e-30 138.3 168 50.0
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-28 131.3 199 40.7
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 3.7e-28 130.2 87 69.0
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 6.4e-28 129.4 80 76.2
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 3.2e-27 127.1 176 46.0
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 1.6e-26 124.8 78 71.8
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 7.8e-26 122.5 106 58.5
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 2.2e-20 104.4 433 27.3
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.2e-20 104.4 76 71.1
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 1.1e-19 102.1 85 62.4
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.0e-17 94.0 427 26.0
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 7.3e-16 89.4 409 25.2
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 9.5e-16 89.0 409 25.2
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 9.5e-16 89.0 69 66.7
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 1.6e-15 88.2 53 73.6
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 4.7e-15 86.7 119 44.5
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 4.0e-14 83.6 408 25.0
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 2.0e-13 81.3 114 38.6


User provided reference genes

Program Settings