Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2477.2 1255 100.0
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2437.1 1315 95.3
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2363.6 1283 93.4
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2360.5 1283 93.4
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2354.3 1284 93.0
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2346.2 1283 92.7
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2343.9 1283 92.5
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2322.7 1283 91.3
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2299.2 1301 90.8
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2180.2 1292 85.8
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2177.1 1293 85.7
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2176.0 1293 85.7
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2173.7 1292 84.5
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2169.0 1290 85.3
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2168.3 1292 85.4
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2167.5 1300 84.3
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2166.0 1292 85.3
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2164.0 1292 85.1
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2163.7 1293 84.8
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2159.4 1287 85.3
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2157.1 1293 85.1
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2145.5 1291 84.3
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2142.9 1290 84.7
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2142.5 1293 84.5
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2138.2 1291 84.7
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2133.6 1301 83.8
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2131.3 1290 84.3
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2130.1 1292 84.4
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2127.8 1294 83.4
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2127.1 1293 83.6
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2125.5 1293 83.8
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2116.3 1293 83.5
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2110.5 1293 84.0
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2108.6 1293 82.2
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2103.9 1288 82.1
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2101.6 1288 82.3
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2100.5 1292 81.9
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2099.7 1288 82.1
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2099.3 1288 82.1
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2096.6 1288 82.0
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1298 82.7
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2092.0 1296 81.6
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2090.5 1294 81.5
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2090.1 1309 82.2
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2089.7 1293 82.0
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2086.2 1288 81.7
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2085.8 1309 82.0
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2085.1 1295 81.3
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2083.1 1294 81.4
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2082.4 1301 81.3
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2075.8 1293 80.0
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2071.6 1293 81.1
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2067.4 1292 81.7
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2063.5 1288 81.4
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2061.2 1294 79.9
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2058.1 1288 81.0
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2055.8 1293 80.1
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2053.5 1293 79.6
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2046.9 1297 80.0
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2038.1 1293 80.6
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2036.9 1293 80.1
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2035.8 1292 79.3
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2030.0 1292 79.6
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2028.1 1294 79.5
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2025.8 1290 80.9
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2023.8 1292 79.5
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2010.0 1296 79.1
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2009.6 1313 79.9
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2002.6 1285 78.8
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1939.9 1218 80.0
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1936.0 1420 71.7
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1897.1 1554 67.0
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1894.0 1147 82.1
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1871.3 1291 75.2
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1858.2 1226 76.7
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1835.5 1297 72.4
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1815.8 1290 71.9
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1720.3 904 94.5
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1719.1 950 92.3
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1700.3 1313 69.0
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1602.0 937 85.2
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1575.5 959 84.7
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1543.9 938 81.6
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1527.7 908 83.1
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1526.1 1069 75.7
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1496.1 912 81.4
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1489.9 910 81.0
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1479.2 1182 65.4
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1431.4 1294 57.9
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1428.7 837 84.9
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1428.7 1160 64.9
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1427.5 1335 56.0
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1424.5 912 77.7
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1411.7 1294 56.6
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1390.6 1294 56.0
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1352.0 953 72.2
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1284.6 917 69.6
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1262.7 1313 51.3
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1124.8 687 83.4
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 9.2e-248 861.3 803 59.0
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.6e-247 860.5 826 57.4
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 6.5e-217 758.8 481 81.9
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 5.3e-195 686.0 499 72.7
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 7.0e-187 659.1 456 77.0
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 2.0e-178 630.9 335 91.9
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 1.0e-177 628.6 552 62.3
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.2e-164 584.3 450 66.0
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 1.0e-161 575.5 350 87.1
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 1.5e-157 561.6 348 85.6
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.2e-156 557.8 420 67.6
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 1.4e-155 555.1 348 84.8
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.2e-154 552.0 348 84.2
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.2e-151 542.0 374 72.2
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 7.8e-146 522.7 303 84.2
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 9.5e-144 515.8 348 79.3
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 5.2e-142 510.0 348 79.0
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 6.6e-137 493.0 348 77.0
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 1.5e-128 465.3 640 41.1
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.7e-124 451.8 302 72.5
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 4.9e-124 450.3 411 59.1
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 8.4e-124 449.5 426 62.9
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 5.1e-121 440.3 275 85.1
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 2.9e-116 424.5 243 86.4
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 1.0e-113 416.0 238 92.9
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 8.4e-108 396.4 254 83.1
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 1.5e-96 359.0 275 74.2
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.6e-90 339.0 349 56.4
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 6.5e-84 317.0 265 60.8
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.2e-83 314.7 260 68.5
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 8.8e-73 280.0 166 81.9
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 2.4e-70 271.9 464 33.4
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.0e-61 242.3 426 38.7
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 7.2e-59 233.8 131 92.4
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 2.1e-58 232.3 130 90.0
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 5.7e-56 224.2 134 82.1
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 1.3e-52 213.0 142 73.9
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 1.9e-51 209.1 127 79.5
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.4e-49 203.0 113 90.3
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 5.7e-48 197.6 119 79.8
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 7.3e-43 180.6 127 69.3
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.2e-37 163.3 98 79.6
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 7.8e-37 160.6 98 78.6
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 2.3e-36 159.1 161 52.8
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.1e-33 148.7 113 63.7
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 7.0e-30 137.5 126 63.5
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.7e-28 132.9 95 63.2
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 6.2e-26 124.4 85 67.1
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.3e-25 122.5 77 77.9
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.3e-25 122.5 77 76.6
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 7.5e-24 117.5 75 73.3
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 1.9e-22 112.8 121 54.5
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 3.2e-22 112.1 73 76.7
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 1.7e-20 106.3 103 61.2
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 8.1e-18 97.4 106 53.8
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 1.1e-17 97.1 95 60.0
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 6.0e-13 81.3 77 57.1
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.0e-13 81.3 54 74.1
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 9.9e-08 63.9 32 87.5
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 6.4e-07 61.2 139 33.8


User provided reference genes

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