Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T4P8DW Arachis hypogaea HOM05D007589 ORTHO05D009610 2.3e-110 404.4 923 100.0
arahy.Tifrunner.gnm1.ann1.VU2AWH Arachis hypogaea HOM05D007589 ORTHO05D009610 1.8e-78 298.5 940 93.4
arahy.Tifrunner.gnm1.ann1.F1J4V4 Arachis hypogaea HOM05D007589 ORTHO05D009610 6.5e-73 280.0 942 93.0
Ca_21937_v3 Cicer arietinum L. HOM05D007589 ORTHO05D009610 1.1e-35 156.4 177 74.0
Medtr4g105520 Medicago truncatula HOM05D007589 ORTHO05D009610 6.1e-31 140.6 178 71.9
DCAR_016475 Daucus carota HOM05D007589 ORTHO05D009610 1.3e-28 132.9 178 68.5
Psat4g058560 Pisum sativum HOM05D007589 ORTHO05D009610 3.7e-28 131.3 178 68.5
TPR.G37464 Trifolium pratense HOM05D007589 ORTHO05D009610 3.7e-28 131.3 178 68.0
CiPaw.11G023600 Carya illinoinensis HOM05D007589 ORTHO05D009610 3.1e-27 128.3 176 63.1
VMungo1309G1240 Vigna mungo HOM05D007589 ORTHO05D009610 3.1e-27 128.3 181 67.4
Phvul.009G176400 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 1.6e-26 125.9 177 68.9
Lj4g0004851 Lotus japonicus HOM05D007589 ORTHO05D009610 4.5e-26 124.4 181 65.2
Glyma.04G185400 Glycine max HOM05D007589 ORTHO05D009610 2.9e-25 121.7 175 65.7
Glyma.17G087700 Glycine max HOM05D007589 ORTHO05D009610 2.9e-25 121.7 196 62.8
VMungo1215G1669 Vigna mungo HOM05D007589 ORTHO05D009610 3.8e-25 121.3 178 66.3
Glyma.05G039100 Glycine max HOM05D007589 ORTHO05D009610 5.0e-25 120.9 178 65.7
Phvul.003G202100 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 5.0e-25 120.9 196 62.8
SalBow5G4666 Salvia bowleyana HOM05D007589 ORTHO05D009610 5.0e-25 120.9 182 61.0
Thecc.03G018500 Theobroma cacao HOM05D007589 ORTHO05D009610 1.5e-24 119.4 182 61.0
Thecc.03G017300 Theobroma cacao HOM05D007589 ORTHO05D009610 5.5e-24 117.5 170 63.5
Thecc.03G018200 Theobroma cacao HOM05D007589 ORTHO05D009610 1.2e-23 116.3 139 72.7
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.8e-23 115.2 181 61.3
Cpa.g.sc153.3 Carica papaya HOM05D007589 ORTHO05D009610 1.0e-22 113.2 176 64.2
Cfa019165 Carpinus fangiana HOM05D007589 ORTHO05D009610 2.3e-22 112.1 184 61.4
Thecc.03G016900 Theobroma cacao HOM05D007589 ORTHO05D009610 3.0e-22 111.7 170 62.9
arahy.Tifrunner.gnm1.ann1.A5PTB1 Arachis hypogaea HOM05D007589 ORTHO05D009610 4.0e-22 111.3 84 60.7
CANSAT80G2749 Cannabis sativa HOM05D007589 ORTHO05D009610 4.0e-22 111.3 181 60.2
GSVIVG01007707001 Vitis vinifera HOM05D007589 ORTHO05D009610 8.9e-22 110.2 85 60.0
Nn4g22695 Nelumbo nucifera HOM05D007589 ORTHO05D009610 1.2e-21 109.8 178 61.8
Haze_07540 Corylus avellana HOM05D007589 ORTHO05D009610 2.6e-21 108.6 106 55.7
Lalb_Chr12g0201691 Lupinus albus HOM05D007589 ORTHO05D009610 2.6e-21 108.6 83 61.4
TAR622G1378 Trochodendron aralioides HOM05D007589 ORTHO05D009610 2.6e-21 108.6 154 67.5
PGR044G1443 Punica granatum HOM05D007589 ORTHO05D009610 3.4e-21 108.2 183 61.7
Dinv38564 Davidia involucrata HOM05D007589 ORTHO05D009610 7.5e-21 107.1 177 62.1
Potri.012G088900 Populus trichocarpa HOM05D007589 ORTHO05D009610 9.8e-21 106.7 111 56.8
Aqoxy3G02849 Aquilegia oxysepala HOM05D007589 ORTHO05D009610 1.3e-20 106.3 176 62.5
MSTRG.11473 Avicennia marina HOM05D007589 ORTHO05D009610 1.7e-20 105.9 184 59.2
Lsat_1_v5_gn_4_75740 Lactuca sativa HOM05D007589 ORTHO05D009610 2.2e-20 105.5 179 59.8
QL10p010870 Quercus lobata HOM05D007589 ORTHO05D009610 2.2e-20 105.5 176 61.9
Atru.chr9.2516 Acer truncatum HOM05D007589 ORTHO05D009610 2.8e-20 105.1 175 59.4
TAR629G1736 Trochodendron aralioides HOM05D007589 ORTHO05D009610 4.9e-20 104.4 110 53.6
RcHm_v2.0_Chr7g0193201 Rosa chinensis HOM05D007589 ORTHO05D009610 6.3e-20 104.0 176 60.8
CSS0018601 Camellia sinensis var. sinensis HOM05D007589 ORTHO05D009610 8.3e-20 103.6 78 61.5
MBI16_g14592_MAGBIO Magnolia biondii HOM05D007589 ORTHO05D009610 8.3e-20 103.6 178 59.0
Actinidia33084 Actinidia chinensis HOM05D007589 ORTHO05D009610 1.1e-19 103.2 163 52.8
Sc12g0005220 Simmondsia chinensis HOM05D007589 ORTHO05D009610 1.8e-19 102.4 177 61.0
CAN.G1166.19 Capsicum annuum HOM05D007589 ORTHO05D009610 2.4e-19 102.1 181 57.5
Prupe.5G170700 Prunus persica HOM05D007589 ORTHO05D009610 2.4e-19 102.1 183 58.5
TWI39G0990 Tripterygium wilfordii HOM05D007589 ORTHO05D009610 2.4e-19 102.1 87 57.5
ClCG01G013280 Citrullus lanatus HOM05D007589 ORTHO05D009610 4.1e-19 101.3 180 56.7
Duzib205G0427 Durio zibethinus HOM05D007589 ORTHO05D009610 7.0e-19 100.5 113 54.9
FAN08G2091 Fragaria x ananassa HOM05D007589 ORTHO05D009610 7.0e-19 100.5 178 58.4
COL.COLO4_30097 Corchorus olitorius HOM05D007589 ORTHO05D009610 9.2e-19 100.1 112 49.1
EL10Ac5g10716 Beta vulgaris HOM05D007589 ORTHO05D009610 1.6e-18 99.4 81 58.0
AUR62008185 Chenopodium quinoa HOM05D003072 ORTHO05D008464 1.6e-18 99.4 184 59.2
Eucgr.K02824 Eucalyptus grandis HOM05D007589 ORTHO05D009610 1.6e-18 99.4 178 60.1
FAN04G0457 Fragaria x ananassa HOM05D007589 ORTHO05D009610 1.6e-18 99.4 178 57.3
Rhsim08G0174500 Rhododendron simsii HOM05D007589 ORTHO05D009610 1.6e-18 99.4 170 59.4
Solyc03g112680.3 Solanum lycopersicum HOM05D007589 ORTHO05D009610 1.6e-18 99.4 184 55.4
Nitab4.5_0003229g0060 Nicotiana tabacum HOM05D007589 ORTHO05D009610 2.7e-18 98.6 178 58.4
PGSC0003DMG400018163 Solanum tuberosum HOM05D007589 ORTHO05D009610 2.7e-18 98.6 178 57.3
Actinidia19335 Actinidia chinensis HOM05D007589 ORTHO05D009610 3.5e-18 98.2 176 58.0
CsaV3_1G008640 Cucumis sativus L. HOM05D007589 ORTHO05D009610 3.5e-18 98.2 180 52.2
Sopen03g031760 Solanum pennellii HOM05D007589 ORTHO05D009610 3.5e-18 98.2 181 55.8
AUR62028765 Chenopodium quinoa HOM05D003072 ORTHO05D008464 4.5e-18 97.8 184 58.7
FAN13G1429 Fragaria x ananassa HOM05D007589 ORTHO05D009610 5.9e-18 97.4 178 57.9
Manes.06G106900 Manihot esculenta HOM05D007589 ORTHO05D009610 7.8e-18 97.1 175 57.7
Nitab4.5_0001207g0080 Nicotiana tabacum HOM05D007589 ORTHO05D009610 7.8e-18 97.1 178 57.9
Ciclev10024596m.g Citrus clementina HOM05D007589 ORTHO05D009610 1.0e-17 96.7 175 58.9
Gohir.A03G090200 Gossypium hirsutum HOM05D007589 ORTHO05D009610 1.3e-17 96.3 184 58.2
Peaxi162Scf00089g00175 Petunia axillaris HOM05D007589 ORTHO05D009610 1.3e-17 96.3 181 56.4
Gohir.D02G117800 Gossypium hirsutum HOM05D007589 ORTHO05D009610 2.3e-17 95.5 182 57.7
MELO3C002280.2 Cucumis melo HOM05D007589 ORTHO05D009610 2.9e-17 95.1 180 56.1
Oeu036007.1 Olea europaea HOM05D007589 ORTHO05D009610 3.8e-17 94.7 85 51.8
Cc04_g12300 Coffea canephora HOM05D007589 ORTHO05D009610 6.6e-17 94.0 90 62.2
Gorai.005G135700 Gossypium raimondii HOM05D007589 ORTHO05D009610 8.6e-17 93.6 182 57.1
Migut.O00121 Erythranthe guttata HOM05D007589 ORTHO05D009610 2.5e-16 92.0 148 67.6
FvH4_5g05610 Fragaria vesca HOM05D007589 ORTHO05D009610 3.3e-16 91.7 111 49.5
FAN18G2238 Fragaria x ananassa HOM05D007589 ORTHO05D009610 3.3e-16 91.7 111 49.5
PSO591G0140 Papaver somniferum HOM05D007589 ORTHO05D009610 4.3e-16 91.3 106 51.9
Sabra12G0064000 Salix brachista HOM05D007589 ORTHO05D009610 7.3e-16 90.5 111 51.4
Lj5P126T52 Lonicera japonica HOM05D007589 ORTHO05D009610 1.6e-15 89.4 87 50.6
TAR622G1112 Trochodendron aralioides HOM05D007589 ORTHO05D009610 3.6e-15 88.2 85 50.6
Sed0025689 Sechium edule HOM05D007589 ORTHO05D009610 4.7e-15 87.8 109 47.7
FAN18G4153 Fragaria x ananassa HOM05D007589 ORTHO05D009610 6.8e-14 84.0 106 48.1
SGA_v2.0_scaffold25G10827 Striga asiatica HOM05D007589 ORTHO05D009610 1.2e-13 83.2 78 47.4
CDE05G1299 Ceratophyllum demersum HOM05D007589 ORTHO05D009610 2.6e-13 82.0 161 55.3
arahy.Tifrunner.gnm1.ann1.A9F7WL Arachis hypogaea HOM05D007589 ORTHO05D009610 3.4e-13 81.6 186 51.6
SGA_v2.0_scaffold90G27887 Striga asiatica HOM05D007589 ORTHO05D009610 3.4e-13 81.6 182 55.5
ATR1152G048 Amborella trichopoda HOM05D007589 ORTHO05D009610 3.7e-12 78.2 79 48.1
SEGI_11765 Sequoiadendron giganteum HOM05D007589 ORTHO05D009610 8.3e-12 77.0 93 40.9
HPP92_003441 Vanilla planifolia HOM05D007589 ORTHO05D009610 5.4e-11 74.3 146 58.2
SEGI_16911 Sequoiadendron giganteum HOM05D000029 ORTHO05D006401 3.3e-08 65.1 74 44.6
Zm00001eb283380 Zea mays HOM05D007589 ORTHO05D009610 4.3e-08 64.7 151 53.6
Os05g0170300 Oryza sativa ssp. japonica HOM05D007589 ORTHO05D009610 7.3e-08 63.9 150 55.3
SEGI_17722 Sequoiadendron giganteum HOM05D000029 ORTHO05D006401 9.5e-08 63.5 74 44.6
SEGI_17881 Sequoiadendron giganteum HOM05D007589 ORTHO05D009610 9.5e-08 63.5 74 43.2
SMO367G1265 Selaginella moellendorffii HOM05D000029 ORTHO05D376716 2.8e-07 62.0 63 46.0
arahy.Tifrunner.gnm1.ann1.I1LE43 Arachis hypogaea HOM05D000029 ORTHO05D006401 3.6e-07 61.6 74 51.4
arahy.Tifrunner.gnm1.ann1.JNH43Q Arachis hypogaea HOM05D000029 ORTHO05D006401 6.2e-07 60.8 74 51.4
THA.LOC104806039 Tarenaya hassleriana HOM05D000021 ORTHO05D000010 1.1e-06 60.1 84 39.3
VMungo1309G2739 Vigna mungo HOM05D000029 ORTHO05D006401 1.4e-06 59.7 78 46.2
Lj3P704T12 Lonicera japonica HOM05D000021 ORTHO05D000010 1.8e-06 59.3 77 37.7
Manes.12G119600 Manihot esculenta HOM05D000029 ORTHO05D000854 2.3e-06 58.9 93 35.5
Phvul.009G244600 Phaseolus vulgaris HOM05D000029 ORTHO05D006401 2.3e-06 58.9 78 44.9
ECA233G5348 Erigeron canadensis HOM05D000021 ORTHO05D000010 3.1e-06 58.5 82 39.0
Migut.G01090 Erythranthe guttata HOM05D000021 ORTHO05D000010 3.1e-06 58.5 88 38.6
Lj3P710T6 Lonicera japonica HOM05D000021 ORTHO05D000010 3.1e-06 58.5 77 37.7
Sopen05g003190 Solanum pennellii HOM05D000029 ORTHO05D006401 4.0e-06 58.2 78 47.4
HanXRQChr04g0118881 Helianthus annuus HOM05D000029 ORTHO05D006401 5.2e-06 57.8 73 46.6
TPR.G22419 Trifolium pratense HOM05D000029 ORTHO05D000854 5.2e-06 57.8 68 39.7
DCAR_014617 Daucus carota HOM05D000029 ORTHO05D006111 6.8e-06 57.4 72 34.7
Prupe.6G275100 Prunus persica HOM05D000021 ORTHO05D000010 6.8e-06 57.4 82 37.8
Atru.chr10.246 Acer truncatum HOM05D000029 ORTHO05D006401 8.9e-06 57.0 70 47.1
BraA02t07384Z Brassica rapa HOM05D000029 ORTHO05D002162 8.9e-06 57.0 102 34.3
CiPaw.06G167400 Carya illinoinensis HOM05D000168 ORTHO05D001118 8.9e-06 57.0 84 33.3
Os02g0211900 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D009610 8.9e-06 57.0 84 35.7
SalBow5G2785 Salvia bowleyana HOM05D000029 ORTHO05D006111 8.9e-06 57.0 73 41.1


User provided reference genes

Program Settings