Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 0.0e+00 1214.5 642 100.0
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 0.0e+00 1195.3 642 97.0
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.2e-270 936.4 566 81.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.9e-266 921.8 658 73.4
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.9e-265 919.1 654 75.5
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.9e-265 919.1 560 80.4
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 2.5e-265 918.7 663 73.3
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.3e-265 918.3 651 73.1
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 5.2e-263 911.0 556 81.5
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 3.4e-262 908.3 555 79.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 7.5e-262 907.1 651 72.5
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 2.9e-261 905.2 556 80.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 8.3e-261 903.7 556 79.0
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.7e-259 898.7 555 81.3
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.0e-258 896.7 556 78.2
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 2.5e-257 892.1 659 71.3
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 3.3e-257 891.7 556 77.7
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 3.3e-257 891.7 663 71.3
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.2e-256 889.8 559 77.3
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.2e-256 887.5 655 69.2
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 6.2e-256 887.5 561 76.6
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.0e-255 886.7 555 77.5
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 4.0e-255 884.8 561 76.8
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 5.2e-255 884.4 554 77.4
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 6.8e-255 884.0 655 69.2
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 2.0e-254 882.5 538 81.2
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.6e-254 882.1 655 69.0
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.3e-253 879.8 554 76.0
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.3e-253 879.8 558 76.0
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.7e-253 879.4 556 76.8
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.9e-253 878.6 554 76.0
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 6.4e-253 877.5 558 75.4
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.1e-252 876.7 560 76.4
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-252 876.7 560 76.4
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.1e-252 876.7 556 75.7
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.2e-252 875.2 560 76.2
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 4.1e-252 874.8 553 76.1
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.4e-252 874.4 560 76.2
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 9.2e-252 873.6 556 76.1
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-251 873.2 560 76.2
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-251 873.2 560 76.1
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.6e-251 872.8 553 75.9
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-251 872.5 559 75.8
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.0e-250 870.2 555 75.7
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 7.3e-249 864.0 555 76.0
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.1e-248 862.4 559 75.0
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 7.5e-246 854.0 550 74.7
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 4.9e-245 851.3 555 75.7
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.9e-244 849.4 565 72.7
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.9e-244 849.4 565 72.7
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 4.1e-244 848.2 648 68.8
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.2e-243 846.7 555 73.0
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.5e-241 839.7 565 72.4
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.1e-240 835.9 562 73.0
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.1e-239 833.6 559 73.3
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.0e-238 829.3 584 69.0
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 2.0e-238 829.3 559 73.0
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.3e-237 826.6 559 73.0
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.3e-237 826.6 535 74.8
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.7e-237 826.2 532 75.4
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.9e-237 825.5 559 73.0
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.1e-236 823.5 557 71.6
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.4e-236 823.2 557 71.6
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 9.2e-236 820.5 563 71.4
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.6e-235 819.7 564 70.9
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.6e-235 819.7 564 70.9
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.6e-234 814.3 556 71.9
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.1e-233 813.5 556 71.9
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 2.1e-232 809.3 531 75.0
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 2.8e-232 808.9 556 71.6
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 3.1e-231 805.4 578 70.4
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.2e-230 803.5 550 70.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.3e-229 800.0 513 75.0
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 7.1e-228 794.3 558 69.7
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.9e-226 788.5 558 69.4
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.5e-225 786.6 588 67.7
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 4.3e-225 785.0 565 68.1
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 4.3e-225 785.0 548 70.1
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 5.6e-225 784.6 548 70.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.3e-224 783.5 558 70.8
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 4.8e-224 781.6 562 69.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 6.2e-224 781.2 660 62.0
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 6.2e-224 781.2 542 71.0
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 6.2e-224 781.2 555 68.6
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 1.1e-223 780.4 555 69.2
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.5e-222 776.5 560 68.2
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 5.8e-222 774.6 551 69.3
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 3.8e-221 771.9 564 69.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 3.8e-221 771.9 564 69.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 3.8e-221 771.9 564 69.9
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 8.4e-221 770.8 561 69.9
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 4.2e-220 768.5 660 63.2
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 7.1e-220 767.7 566 69.8
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 4.6e-219 765.0 565 66.9
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.3e-218 763.5 567 66.3
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 3.9e-218 761.9 578 64.7
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 1.2e-214 750.4 557 65.7
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 4.5e-214 748.4 554 66.2
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.2e-213 746.1 530 70.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.0e-210 735.7 509 70.1
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 3.0e-210 735.7 503 72.2
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 5.1e-210 734.9 560 64.8
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.4e-207 726.1 565 64.6
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 2.5e-204 716.1 555 65.2
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 5.5e-204 714.9 562 62.6
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 7.1e-204 714.5 563 62.9
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-203 712.6 560 66.1
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 2.7e-203 712.6 560 66.1
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 2.7e-203 712.6 560 66.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 9.6e-201 704.1 535 66.7
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 6.9e-199 698.0 545 68.1
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.0e-198 696.4 557 63.9
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.4e-196 690.3 566 64.7
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 9.3e-196 687.6 559 63.3
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 6.7e-194 681.4 562 64.2
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.4e-190 669.1 560 61.2
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 5.3e-183 645.2 570 58.9
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.2e-182 644.0 577 58.9
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.6e-177 626.3 563 57.9
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 4.1e-175 619.0 557 59.1
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 2.4e-167 593.2 436 66.5
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 2.2e-165 586.6 584 55.1
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 4.2e-164 582.4 556 55.9
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.5e-158 562.4 460 63.0
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.5e-153 547.4 504 64.7
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 8.3e-152 541.6 553 53.9
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 2.3e-146 523.5 338 73.7
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.1e-143 514.6 563 47.8
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 4.6e-134 482.6 330 70.6
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 7.8e-118 428.7 388 55.7
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.4e-114 417.9 389 53.7
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.7e-112 411.0 295 67.8
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.0e-93 348.6 351 57.0
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.9e-72 277.3 556 33.8
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.2e-70 271.9 178 72.5
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 6.7e-69 266.2 396 42.7
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.8e-61 241.5 221 56.6
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 4.5e-49 200.3 166 61.4
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 4.0e-37 160.6 161 52.2
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.3e-32 145.6 320 30.6
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.2e-27 128.3 94 69.1
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 6.4e-27 126.7 76 77.6
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.4e-21 109.0 104 67.3
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 7.5e-20 103.2 99 58.6
SMO334G0060 Selaginella moellendorffii HOM05D004961 ORTHO05D377666 2.1e-14 85.1 156 31.4
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 2.6e-12 78.2 68 58.8
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.0e-08 66.2 39 79.5
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 2.3e-08 65.1 58 60.3


User provided reference genes

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