Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 1.3e-90 336.3 156 100.0
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.8e-23 113.2 85 67.1
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.4e-20 102.8 61 72.1
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.2e-19 100.5 61 70.5
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 3.5e-19 99.0 55 78.2
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 7.7e-19 97.8 55 78.2
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 7.7e-19 97.8 55 76.4
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.7e-18 96.7 84 53.6
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 3.8e-18 95.5 61 67.2
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 5.0e-18 95.1 55 74.5
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 6.5e-18 94.7 63 66.7
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.1e-17 94.0 73 60.3
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.4e-17 93.6 61 65.6
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 1.9e-17 93.2 65 66.2
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 2.5e-17 92.8 65 64.6
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.2e-17 92.4 55 74.5
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 4.2e-17 92.0 55 72.7
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 5.5e-17 91.7 55 72.7
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 7.2e-17 91.3 55 72.7
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 1.2e-16 90.5 62 66.1
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.2e-16 90.5 65 63.1
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-16 90.5 65 63.1
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-16 90.5 65 63.1
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-16 90.5 65 63.1
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 1.2e-16 90.5 78 56.4
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.6e-16 90.1 81 56.8
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.6e-16 90.1 55 72.7
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-16 90.1 65 63.1
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.6e-16 90.1 65 63.1
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 1.6e-16 90.1 72 58.3
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 2.1e-16 89.7 55 70.9
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 2.7e-16 89.4 55 70.9
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 2.7e-16 89.4 55 69.1
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 2.7e-16 89.4 62 61.3
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 3.6e-16 89.0 65 61.5
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 4.7e-16 88.6 61 63.9
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 6.1e-16 88.2 65 61.5
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 6.1e-16 88.2 72 56.9
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.1e-16 88.2 71 57.7
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 6.1e-16 88.2 65 63.1
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 6.1e-16 88.2 65 56.9
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 6.1e-16 88.2 80 53.8
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 8.0e-16 87.8 61 65.6
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 8.0e-16 87.8 65 61.5
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 8.0e-16 87.8 55 65.5
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 8.0e-16 87.8 65 63.1
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.0e-15 87.4 73 58.9
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 1.0e-15 87.4 55 69.1
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.4e-15 87.0 65 61.5
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.4e-15 87.0 73 57.5
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.4e-15 87.0 55 70.9
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 1.8e-15 86.7 55 67.3
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 1.8e-15 86.7 53 71.7
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.8e-15 86.7 65 61.5
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 1.8e-15 86.7 65 61.5
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.8e-15 86.7 65 61.5
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 2.3e-15 86.3 72 52.8
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.3e-15 86.3 65 58.5
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 3.0e-15 85.9 65 60.0
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 3.9e-15 85.5 55 67.3
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 3.9e-15 85.5 65 61.5
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 5.2e-15 85.1 65 53.8
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 5.2e-15 85.1 85 49.4
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 5.2e-15 85.1 65 60.0
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 6.7e-15 84.7 55 67.3
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 6.7e-15 84.7 55 67.3
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 6.7e-15 84.7 55 67.3
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 6.7e-15 84.7 65 61.5
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 6.7e-15 84.7 65 61.5
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 6.7e-15 84.7 61 63.9
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 8.8e-15 84.3 61 62.3
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.1e-14 84.0 65 58.5
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.5e-14 83.6 55 67.3
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 1.5e-14 83.6 64 57.8
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 2.0e-14 83.2 103 42.7
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 2.0e-14 83.2 55 67.3
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 2.0e-14 83.2 55 67.3
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 2.0e-14 83.2 55 67.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.0e-14 83.2 55 63.6
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.0e-14 83.2 65 60.0
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.0e-14 83.2 55 63.6
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 2.6e-14 82.8 61 62.3
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 2.6e-14 82.8 61 62.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 2.6e-14 82.8 61 62.3
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 2.6e-14 82.8 61 62.3
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 2.6e-14 82.8 61 62.3
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 3.3e-14 82.4 85 49.4
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 3.3e-14 82.4 72 55.6
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 3.3e-14 82.4 55 63.6
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 4.4e-14 82.0 55 61.8
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 4.4e-14 82.0 71 53.5
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.4e-14 82.0 85 48.2
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 4.4e-14 82.0 85 48.2
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 5.7e-14 81.6 85 48.2
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 2.2e-13 79.7 65 55.4
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 2.8e-13 79.3 65 56.9
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 6.3e-13 78.2 63 55.6
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 8.2e-13 77.8 55 60.0
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.1e-12 77.4 55 63.6
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.1e-12 77.4 45 73.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.1e-12 77.4 45 73.3
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 4.2e-09 65.5 68 54.4
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 3.6e-08 62.4 55 50.9
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.0e-07 60.8 54 46.3
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 4.0e-07 58.9 74 44.6
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 1.5e-06 57.0 34 64.7


User provided reference genes

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