Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 9.4e-241 836.6 428 100.0
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 9.4e-233 810.1 430 97.0
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 8.7e-170 600.9 430 70.9
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 3.0e-162 575.9 428 69.2
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.8e-159 566.6 430 67.9
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.7e-157 560.1 387 71.8
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 2.5e-153 546.2 424 67.5
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 5.6e-153 545.0 387 68.0
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 5.3e-151 538.5 425 65.6
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 5.8e-150 535.0 427 65.1
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 5.5e-148 528.5 387 68.2
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 2.7e-147 526.2 423 64.5
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 2.3e-146 523.1 415 66.0
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.3e-144 517.3 421 63.4
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 4.5e-142 508.8 422 62.3
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.9e-141 506.1 423 62.9
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.6e-139 500.4 425 61.6
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 6.1e-139 498.4 425 60.2
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.8e-138 496.9 424 60.1
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 5.1e-138 495.4 391 62.1
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.2e-136 490.0 431 57.8
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 2.8e-136 489.6 426 61.5
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.1e-135 487.6 416 61.3
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.2e-134 484.2 437 57.9
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.5e-134 483.8 391 60.6
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.5e-134 483.8 391 60.9
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 2.0e-134 483.4 421 59.6
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 3.4e-134 482.6 422 61.6
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 5.9e-134 481.9 392 61.0
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.9e-133 479.6 426 58.0
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 6.5e-133 478.4 391 61.1
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 5.5e-132 475.3 423 60.5
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.7e-131 472.2 420 59.5
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 4.7e-131 472.2 420 59.8
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 2.3e-130 469.9 357 65.0
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 3.0e-130 469.5 421 58.7
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 3.9e-130 469.2 420 58.8
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 1.5e-129 467.2 426 57.5
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 1.7e-128 463.8 344 70.3
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 3.7e-128 462.6 423 58.9
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 2.4e-127 459.9 426 57.3
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 5.3e-127 458.8 425 57.2
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 3.4e-126 456.1 423 57.4
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.2e-125 453.4 424 54.5
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 8.5e-125 451.4 431 57.5
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 8.5e-125 451.4 427 53.6
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 8.5e-125 451.4 426 56.6
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 8.5e-125 451.4 426 56.6
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.1e-124 451.1 422 57.3
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.4e-124 450.7 423 56.5
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 3.2e-124 449.5 424 56.6
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 7.2e-124 448.4 425 56.9
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 3.6e-123 446.0 424 56.4
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 4.7e-123 445.7 428 56.3
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 8.0e-123 444.9 417 55.9
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.0e-122 444.5 416 55.5
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 3.9e-122 442.6 419 54.7
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 3.9e-122 442.6 419 56.1
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 3.9e-122 442.6 425 55.1
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.5e-121 440.7 425 55.3
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 3.3e-121 439.5 429 55.2
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 5.7e-121 438.7 345 63.8
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.7e-120 437.2 437 55.4
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 2.2e-120 436.8 428 52.6
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 6.3e-120 435.3 348 63.8
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.1e-119 434.5 344 62.8
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 9.1e-119 431.4 434 51.8
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 7.7e-118 428.3 425 54.1
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.7e-117 427.2 425 53.9
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 3.8e-117 426.0 425 52.0
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 5.0e-117 425.6 425 53.9
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.1e-116 424.5 420 54.5
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 2.5e-116 423.3 425 53.4
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 2.5e-116 423.3 425 53.4
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 1.2e-115 421.0 349 60.5
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 1.4e-114 417.5 421 54.9
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.3e-112 411.0 348 58.0
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.3e-112 411.0 348 58.0
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 2.2e-112 410.2 452 50.4
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 2.8e-112 409.8 423 51.3
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 8.2e-112 408.3 393 53.4
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 1.8e-111 407.1 416 49.8
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 2.4e-111 406.8 341 59.2
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.6e-110 404.1 340 59.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 5.0e-109 399.1 363 55.6
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 4.2e-108 396.0 393 51.9
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 5.2e-106 389.0 340 59.7
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.7e-104 384.0 344 57.0
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 4.8e-104 382.5 344 56.7
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 2.7e-102 376.7 402 46.3
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 5.5e-100 369.0 334 56.3
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 6.1e-99 365.5 423 46.3
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.5e-89 334.3 309 53.7
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.9e-80 302.8 272 51.1
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.2e-75 288.1 256 57.4
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 6.4e-64 249.2 428 35.3
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 4.2e-63 246.5 185 63.8
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.2e-62 245.0 370 38.9
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 5.6e-60 236.1 430 34.4
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 9.6e-60 235.3 343 38.8
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 6.4e-56 222.6 296 43.2
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.8e-50 204.5 293 41.0
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 6.2e-43 179.5 201 50.2
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 2.4e-42 177.6 422 32.7
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 2.6e-41 174.1 362 32.3
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 2.6e-33 147.5 173 44.5
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.4e-23 115.2 106 52.8
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.4e-23 115.2 110 51.8
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.2e-22 112.1 105 52.4
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.3e-11 73.2 77 63.6
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.4e-10 71.2 54 63.0
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 4.1e-10 70.5 82 47.6
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 3.5e-09 67.4 82 59.8
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.9e-08 64.3 86 57.0
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 3.8e-08 63.9 77 59.7
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.8e-08 63.9 85 42.4
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.8e-08 63.9 85 42.4
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 1.1e-07 62.4 61 50.8
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.9e-07 61.6 61 45.9


User provided reference genes

Program Settings