Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ST064T Arachis hypogaea HOM05D003450 ORTHO05D004150 7.1e-204 713.8 372 100.0
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 7.6e-73 278.5 252 67.9
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 7.6e-73 278.5 248 67.3
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 1.6e-70 270.8 317 56.8
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 1.6e-70 270.8 326 55.8
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 1.6e-70 270.8 317 56.2
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 2.1e-70 270.4 326 55.2
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 2.1e-70 270.4 317 55.8
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 8.7e-69 265.0 326 55.5
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 8.7e-69 265.0 326 55.5
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 1.3e-67 261.2 329 54.4
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 2.8e-67 260.0 313 56.5
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 2.8e-67 260.0 326 54.6
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 6.2e-67 258.8 326 54.0
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 1.2e-65 254.6 321 52.3
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 2.0e-65 253.8 315 53.7
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 2.0e-65 253.8 318 52.8
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 2.0e-65 253.8 318 52.8
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 1.7e-64 250.8 318 52.2
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.9e-64 250.0 316 52.2
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 4.9e-64 249.2 319 52.4
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 8.4e-64 248.4 319 51.7
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 1.4e-63 247.7 340 49.4
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 2.4e-63 246.9 318 51.9
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 3.2e-63 246.5 322 51.2
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 3.2e-63 246.5 318 51.9
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 3.2e-63 246.5 323 51.4
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 4.2e-63 246.1 318 51.9
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 4.2e-63 246.1 321 51.7
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 4.2e-63 246.1 318 51.6
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 7.1e-63 245.4 323 51.1
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 7.1e-63 245.4 323 51.1
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 7.1e-63 245.4 318 51.6
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 7.1e-63 245.4 316 51.6
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 9.3e-63 245.0 323 51.1
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 1.6e-62 244.2 318 50.3
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 3.5e-62 243.0 321 51.1
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 3.5e-62 243.0 318 50.0
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 3.5e-62 243.0 318 50.0
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 4.6e-62 242.7 319 51.1
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 6.0e-62 242.3 318 50.6
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 7.9e-62 241.9 318 50.9
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 7.9e-62 241.9 318 50.0
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 7.9e-62 241.9 318 50.9
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 1.0e-61 241.5 264 57.2
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.0e-61 241.5 318 50.6
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 1.3e-61 241.1 318 49.4
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 1.3e-61 241.1 316 50.6
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.8e-61 240.7 318 50.0
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 2.3e-61 240.4 316 50.3
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 3.0e-61 240.0 314 51.9
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 5.1e-61 239.2 318 50.6
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 1.1e-60 238.0 318 49.4
Dinv38912 Davidia involucrata HOM05D003450 ORTHO05D004150 1.5e-60 237.7 246 59.3
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 1.5e-60 237.7 325 49.8
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 2.5e-60 236.9 322 49.7
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 4.3e-60 236.1 317 49.5
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 4.3e-60 236.1 342 50.0
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 4.3e-60 236.1 318 50.3
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 7.4e-60 235.3 318 50.0
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 7.4e-60 235.3 319 49.2
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 9.6e-60 235.0 247 57.9
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 1.3e-59 234.6 316 48.7
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.1e-59 233.8 258 57.0
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 2.8e-59 233.4 314 49.4
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 2.8e-59 233.4 319 49.2
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 4.8e-59 232.6 320 49.4
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 4.8e-59 232.6 317 48.9
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 4.8e-59 232.6 318 49.7
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 1.1e-58 231.5 318 49.7
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 1.4e-58 231.1 317 48.6
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 1.4e-58 231.1 317 48.6
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 1.4e-58 231.1 317 48.6
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 1.4e-58 231.1 317 48.6
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.4e-58 231.1 319 49.2
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 1.8e-58 230.7 317 48.6
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 2.4e-58 230.3 315 50.8
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 3.1e-58 229.9 317 48.3
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 3.1e-58 229.9 317 48.6
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 4.0e-58 229.6 313 51.1
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 5.3e-58 229.2 314 48.4
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 6.9e-58 228.8 315 49.5
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 2.0e-57 227.3 319 48.3
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 2.0e-57 227.3 314 48.1
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 2.0e-57 227.3 318 48.4
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 2.6e-57 226.9 314 48.1
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 2.6e-57 226.9 314 48.1
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 2.6e-57 226.9 332 47.6
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 2.6e-57 226.9 318 48.4
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.6e-57 226.9 316 48.4
Gohir.A05G354750 Gossypium hirsutum HOM05D003450 ORTHO05D004150 5.8e-57 225.7 239 57.7
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 7.6e-57 225.3 322 47.2
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 7.6e-57 225.3 376 43.9
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 2.2e-56 223.8 315 47.6
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 2.2e-56 223.8 314 47.8
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 2.2e-56 223.8 314 47.8
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.2e-56 223.8 325 47.4
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.9e-56 223.4 268 53.7
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 8.4e-56 221.9 317 48.3
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 8.4e-56 221.9 323 46.4
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 1.4e-55 221.1 318 46.9
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 3.2e-55 219.9 314 47.8
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 5.5e-55 219.2 319 46.1
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 5.5e-55 219.2 318 47.5
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 7.1e-55 218.8 321 46.1
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 1.6e-54 217.6 316 47.5
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 6.0e-54 215.7 319 46.1
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 6.0e-54 215.7 325 46.5
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 7.9e-54 215.3 257 53.3
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 1.3e-53 214.5 318 45.6
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 3.9e-53 213.0 299 47.2
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 5.1e-53 212.6 271 52.0
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 2.5e-52 210.3 300 47.7
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 8.2e-51 205.3 253 53.4
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 1.8e-50 204.1 253 53.4
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 9.0e-50 201.8 251 53.0
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 1.2e-49 201.4 279 49.8
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 1.7e-48 197.6 317 43.2
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 6.7e-45 185.7 235 51.5
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 3.3e-44 183.3 249 48.6
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 2.2e-43 180.6 318 40.6
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.1e-42 178.3 321 43.6
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 2.4e-42 177.2 315 41.6
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.4e-39 167.9 305 43.3
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 1.4e-39 167.9 235 48.5
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 1.9e-39 167.5 264 46.6
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 1.9e-39 167.5 264 46.6
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 9.3e-39 165.2 241 47.3
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.9e-37 159.8 305 41.3
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 3.9e-37 159.8 251 45.4
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 6.7e-37 159.1 166 57.8
CAN.G1274.36 Capsicum annuum HOM05D003450 ORTHO05D004150 1.3e-32 144.8 244 41.8
Zm00001eb137620 Zea mays HOM05D003450 ORTHO05D004150 2.5e-31 140.6 152 55.9
Solyc02g084490.1 Solanum lycopersicum HOM05D003450 ORTHO05D004150 2.3e-29 134.0 237 42.2
SEGI_37208 Sequoiadendron giganteum HOM05D003450 ORTHO05D004150 5.1e-29 132.9 131 60.3
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 6.7e-29 132.5 266 38.0
Prupe.3G293500 Prunus persica HOM05D003450 ORTHO05D004150 1.3e-27 128.3 127 61.4
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 2.0e-25 120.9 243 35.8
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 4.7e-22 109.8 235 40.9
Cfa023435 Carpinus fangiana HOM05D003450 ORTHO05D125710 8.2e-19 99.0 226 33.6
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 9.1e-18 95.5 135 49.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.2e-17 95.1 124 50.8
Cre06.g271950 Chlamydomonas reinhardtii HOM05D003450 ORTHO05D004150 1.3e-16 91.7 237 32.9
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 8.5e-16 89.0 130 49.2
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 1.1e-15 88.6 135 48.1
arahy.Tifrunner.gnm1.ann1.0KE5GJ Arachis hypogaea HOM05D000595 ORTHO05D004141 1.2e-12 78.6 65 72.3
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 7.5e-12 75.9 228 31.1
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 1.7e-11 74.7 52 76.9
EL10Ac5g11312 Beta vulgaris HOM05D003450 ORTHO05D004150 6.3e-11 72.8 98 46.9
Hund02493 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.2e-09 68.6 63 57.1
arahy.Tifrunner.gnm1.ann1.CAW9WT Arachis hypogaea HOM05D003450 ORTHO05D026894 2.2e-08 64.3 108 39.8
arahy.Tifrunner.gnm1.ann1.F4W2B8 Arachis hypogaea HOM05D003450 ORTHO05D004150 3.2e-07 60.5 103 40.8
Zm00001eb128800 Zea mays HOM05D003450 ORTHO05D004150 5.5e-07 59.7 89 42.7
arahy.Tifrunner.gnm1.ann1.D2JCSM Arachis hypogaea HOM05D003450 ORTHO05D026894 1.2e-06 58.5 37 73.0
arahy.Tifrunner.gnm1.ann1.84ZZZT Arachis hypogaea HOM05D003450 ORTHO05D026894 4.7e-06 56.6 33 81.8


User provided reference genes

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