Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 7.6e-261 903.3 450 100.0
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 5.9e-213 744.2 396 94.4
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.2e-141 507.3 423 65.2
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.6e-141 506.9 423 65.2
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.0e-140 502.7 431 63.3
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.1e-139 500.7 430 63.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.1e-138 496.5 436 63.1
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.8e-138 496.1 429 62.5
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.8e-138 496.1 447 60.4
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 9.0e-137 491.1 438 60.0
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 1.5e-136 490.3 429 61.5
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.0e-136 490.0 449 60.1
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 2.0e-136 490.0 448 59.8
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 3.4e-136 489.2 437 60.0
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.1e-133 479.9 449 59.9
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.0e-128 463.4 430 60.0
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.6e-128 463.0 425 58.6
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.9e-127 458.8 425 57.9
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 4.9e-127 458.8 425 57.9
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 8.4e-127 458.0 422 58.5
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.1e-126 457.6 437 57.4
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.5e-126 456.4 425 57.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.2e-125 454.1 437 57.0
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.7e-125 453.0 425 57.2
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.7e-125 453.0 425 57.2
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 3.5e-125 452.6 425 57.9
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.8e-124 450.3 425 56.9
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 3.0e-124 449.5 426 57.5
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 6.7e-124 448.4 422 58.5
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-123 447.6 422 58.5
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.1e-123 447.6 399 61.2
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.5e-123 446.4 437 57.0
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 3.3e-123 446.0 425 56.7
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.3e-122 444.1 423 56.3
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.6e-122 443.7 423 57.0
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.2e-122 443.4 425 56.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 4.8e-122 442.2 459 54.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.8e-122 442.2 459 54.2
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.8e-122 442.2 459 54.2
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 8.2e-122 441.4 437 56.8
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 5.3e-121 438.7 423 57.2
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.0e-120 436.8 459 53.8
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 4.5e-120 435.6 423 55.8
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 7.7e-120 434.9 432 54.9
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 6.5e-119 431.8 423 55.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.1e-118 431.0 428 54.4
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.4e-118 430.6 452 53.8
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 3.2e-118 429.5 420 57.1
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 7.2e-118 428.3 428 54.9
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.0e-116 422.9 436 54.4
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 8.8e-116 421.4 460 52.4
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 3.3e-115 419.5 490 50.2
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 5.7e-115 418.7 455 52.7
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 7.4e-115 418.3 422 53.3
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 2.6e-112 409.8 442 51.1
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.4e-110 404.1 515 47.4
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.9e-110 403.7 453 52.1
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 7.2e-110 401.7 450 49.6
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.4e-108 397.5 454 48.9
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.4e-108 397.5 422 52.4
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 6.7e-108 395.2 375 58.9
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-107 394.4 428 51.6
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.0e-107 393.7 418 52.2
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 3.3e-107 392.9 425 51.8
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 4.4e-107 392.5 451 49.7
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.8e-106 389.8 436 53.2
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.8e-105 387.1 446 48.2
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 4.1e-105 386.0 447 50.1
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 7.0e-105 385.2 429 49.7
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.2e-104 384.4 431 49.7
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.7e-103 380.6 425 50.4
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.7e-101 373.2 432 49.8
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 8.0e-101 371.7 376 54.0
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.8e-100 370.5 425 48.5
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 3.8e-95 352.8 422 48.3
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 5.9e-88 328.9 284 62.3
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.7e-88 328.6 495 42.8
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 2.9e-87 326.6 315 55.9
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 3.6e-85 319.7 319 55.5
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 2.0e-83 313.9 427 41.9
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.6e-83 313.5 431 43.2
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.4e-81 307.0 322 54.0
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 9.1e-81 305.1 424 42.2
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.2e-72 278.1 418 41.1
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.2e-66 257.3 427 38.9
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.2e-65 253.4 389 40.9
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-64 251.1 425 36.2
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.7e-64 250.4 430 36.3
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.7e-64 250.4 450 36.4
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 4.6e-64 249.6 428 36.7
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-63 248.4 427 38.4
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-63 248.1 434 38.0
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.5e-62 244.6 428 37.6
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 5.6e-62 242.7 438 36.8
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 5.6e-62 242.7 343 47.2
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.8e-61 240.4 430 37.7
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.8e-61 240.4 437 38.4
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.6e-61 240.0 451 36.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.2e-61 239.2 442 37.1
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-60 238.4 400 38.8
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 2.3e-60 237.3 425 36.9
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 2.6e-59 233.8 426 38.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 4.4e-59 233.0 417 38.4
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.5e-59 232.3 438 36.8
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 9.8e-59 231.9 430 36.0
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 2.9e-58 230.3 424 37.5
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 3.7e-58 229.9 424 36.6
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 3.7e-58 229.9 422 37.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 4.9e-58 229.6 424 37.0
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 6.4e-58 229.2 422 37.4
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 8.3e-58 228.8 428 38.1
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 5.4e-57 226.1 436 37.4
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 5.4e-57 226.1 428 37.9
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 9.2e-57 225.3 423 37.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.6e-56 224.6 429 35.0
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 8.6e-55 218.8 365 39.5
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-54 218.4 387 38.5
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 3.3e-54 216.9 387 35.1
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-51 208.4 436 34.4
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 7.6e-51 205.7 387 35.9
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.7e-50 204.5 250 49.6
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 3.7e-50 203.4 474 33.8
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 4.9e-50 203.0 369 35.5
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 7.8e-48 195.7 369 36.9
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.7e-47 194.5 391 33.8
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.3e-47 194.1 352 35.2
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 4.0e-44 183.3 237 45.6
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.0e-44 183.3 384 34.1
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 9.3e-41 172.2 389 31.9
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.3e-38 163.7 276 38.4
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.6e-38 162.2 264 40.9
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.1e-37 159.1 408 30.4
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 9.9e-35 152.1 145 51.0
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.0e-31 140.6 268 37.3
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 5.1e-31 139.8 393 28.5
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 4.3e-30 136.7 127 55.1
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 9.0e-28 129.0 250 35.2
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.0e-27 127.9 92 67.4
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.3e-26 125.2 108 53.7
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-24 118.6 152 44.1
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 8.7e-23 112.5 150 44.0
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 7.4e-22 109.4 58 87.9
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 7.4e-22 109.4 77 70.1
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.4e-20 104.4 91 58.2
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.9e-20 102.8 147 41.5
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 9.0e-20 102.4 151 40.4
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 2.0e-19 101.3 149 40.9
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 4.5e-19 100.1 297 31.0
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 1.4e-17 95.1 341 24.6
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.4e-17 95.1 189 37.0
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 4.2e-17 93.6 176 34.7
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-16 91.3 142 40.1
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.3e-14 84.0 116 37.9
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.4e-14 82.8 173 31.8
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.6e-14 82.4 83 53.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 9.6e-14 82.4 383 24.5
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.8e-13 80.9 252 29.8
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 8.2e-13 79.3 136 39.7
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.1e-12 79.0 58 60.3
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.8e-12 78.2 100 41.0
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.4e-12 77.8 75 60.0
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.5e-11 75.1 61 54.1
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 2.6e-11 74.3 80 48.8
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 3.4e-11 73.9 105 44.8
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.0e-10 72.4 176 26.7
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.2e-10 71.2 83 47.0
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.9e-10 70.9 81 53.1
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 6.5e-10 69.7 57 54.4
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.1e-09 68.9 133 34.6
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.1e-09 68.9 63 47.6
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 9.3e-09 65.9 81 43.2
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 6.1e-08 63.2 95 40.0
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 7.9e-08 62.8 120 32.5
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.0e-07 62.4 161 32.3
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.8e-07 61.6 158 31.0
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 5.1e-07 60.1 56 48.2
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-06 58.9 87 43.7
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.3e-06 57.4 115 30.4


User provided reference genes

Program Settings