Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SS96TB Arachis hypogaea HOM05D003550 ORTHO05D004336 4.1e-44 181.0 92 100.0
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 4.4e-22 107.8 119 56.3
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 1.3e-21 106.3 119 54.6
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 8.3e-21 103.6 114 52.6
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 1.4e-20 102.8 118 54.2
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 5.4e-20 100.9 119 51.3
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 7.0e-20 100.5 118 52.5
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 9.1e-20 100.1 115 52.2
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 9.1e-20 100.1 119 51.3
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 2.0e-19 99.0 114 52.6
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 2.0e-19 99.0 119 51.3
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 2.7e-19 98.6 118 52.5
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 3.5e-19 98.2 115 51.3
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 4.5e-19 97.8 115 52.2
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 4.5e-19 97.8 116 53.4
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 5.9e-19 97.4 115 50.4
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 7.7e-19 97.1 115 49.6
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 7.7e-19 97.1 115 49.6
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 7.7e-19 97.1 115 51.3
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 1.0e-18 96.7 115 53.0
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 1.0e-18 96.7 115 53.0
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.7e-18 95.9 119 50.4
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.7e-18 95.9 119 50.4
Cpa.g.sc169.51 Carica papaya HOM05D003550 ORTHO05D004336 1.7e-18 95.9 115 52.2
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 1.7e-18 95.9 119 50.4
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 1.7e-18 95.9 115 52.2
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 1.7e-18 95.9 114 50.0
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 2.2e-18 95.5 115 49.6
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 2.2e-18 95.5 114 49.1
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 2.9e-18 95.1 115 49.6
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 2.9e-18 95.1 122 45.9
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 2.9e-18 95.1 119 51.3
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 2.9e-18 95.1 115 48.7
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 2.9e-18 95.1 119 52.1
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 3.8e-18 94.7 119 49.6
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 3.8e-18 94.7 114 50.9
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 5.0e-18 94.4 115 50.4
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 6.5e-18 94.0 115 50.4
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 6.5e-18 94.0 115 50.4
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 6.5e-18 94.0 115 50.4
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 6.5e-18 94.0 115 50.4
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 6.5e-18 94.0 115 50.4
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 1.1e-17 93.2 115 49.6
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 1.1e-17 93.2 115 50.4
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 1.5e-17 92.8 116 47.4
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 1.5e-17 92.8 114 47.4
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 1.9e-17 92.4 113 51.3
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 1.9e-17 92.4 116 51.7
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 1.9e-17 92.4 114 45.6
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 3.2e-17 91.7 114 49.1
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 3.2e-17 91.7 115 48.7
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 3.2e-17 91.7 115 48.7
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 3.2e-17 91.7 115 49.6
vmacro13761 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 3.2e-17 91.7 113 49.6
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 4.2e-17 91.3 114 49.1
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 4.2e-17 91.3 115 47.0
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 4.2e-17 91.3 115 47.0
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 5.5e-17 90.9 113 48.7
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 7.2e-17 90.5 120 50.0
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 7.2e-17 90.5 118 47.5
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 9.5e-17 90.1 119 48.7
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 9.5e-17 90.1 114 45.6
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 1.2e-16 89.7 114 46.5
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 1.2e-16 89.7 122 46.7
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.2e-16 89.7 122 46.7
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.2e-16 89.7 116 47.4
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 1.2e-16 89.7 115 49.6
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 1.2e-16 89.7 118 49.2
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.6e-16 89.4 114 48.2
CDE09G0620 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.8e-16 88.6 118 45.8
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 2.8e-16 88.6 115 49.6
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 3.6e-16 88.2 114 46.5
CDE02G1072 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 3.6e-16 88.2 122 42.6
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 3.6e-16 88.2 114 45.6
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 3.6e-16 88.2 116 47.4
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 3.6e-16 88.2 116 47.4
ATR0782G088 Amborella trichopoda HOM05D003550 ORTHO05D004336 4.7e-16 87.8 115 48.7
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 4.7e-16 87.8 115 48.7
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 6.1e-16 87.4 114 47.4
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 6.1e-16 87.4 114 45.6
Eucgr.G03219 Eucalyptus grandis HOM05D003550 ORTHO05D004336 6.1e-16 87.4 114 47.4
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 6.1e-16 87.4 114 47.4
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 8.0e-16 87.0 121 46.3
MD02G1282100 Malus domestica HOM05D003550 ORTHO05D004336 8.0e-16 87.0 119 47.9
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 1.0e-15 86.7 114 43.9
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 1.0e-15 86.7 115 47.8
Atru.chr12.1265 Acer truncatum HOM05D003550 ORTHO05D004336 1.8e-15 85.9 115 49.6
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 3.0e-15 85.1 115 45.2
AagrBONN_evm.TU.Sc2ySwM_344.1602 Anthoceros agrestis HOM05D003550 ORTHO05D004336 4.0e-15 84.7 114 47.4
Glyma.15G233001 Glycine max HOM05D003550 ORTHO05D004336 5.2e-15 84.3 119 47.9
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 5.2e-15 84.3 115 46.1
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 5.2e-15 84.3 119 43.7
arahy.Tifrunner.gnm1.ann1.2K1FXD Arachis hypogaea HOM05D003550 ORTHO05D004336 6.8e-15 84.0 97 52.6
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 6.8e-15 84.0 115 43.5
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 6.8e-15 84.0 114 43.9
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 6.8e-15 84.0 114 46.5
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 6.8e-15 84.0 115 45.2
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 8.8e-15 83.6 119 46.2
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 8.8e-15 83.6 114 45.6
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 1.2e-14 83.2 115 47.0
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 1.2e-14 83.2 120 43.3
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 1.2e-14 83.2 114 44.7
Actinidia24461 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.5e-14 82.8 115 42.6
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 1.5e-14 82.8 117 45.3
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.5e-14 82.8 115 44.3
Actinidia06972 Actinidia chinensis HOM05D003550 ORTHO05D004336 3.4e-14 81.6 115 41.7
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 4.4e-14 81.3 115 46.1
Lj9C657G2 Lonicera japonica HOM05D003550 ORTHO05D004336 5.7e-14 80.9 112 46.4
Ah.10g030140 Amaranthus hybridus HOM05D003550 ORTHO05D004336 9.8e-14 80.1 114 43.9
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 1.3e-13 79.7 115 40.0
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 1.7e-13 79.3 115 41.7
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 2.2e-13 79.0 122 41.8
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 2.2e-13 79.0 114 43.0
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 2.8e-13 78.6 114 43.0
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 2.8e-13 78.6 114 41.2
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 4.9e-13 77.8 114 42.1
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 4.9e-13 77.8 114 42.1
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 6.3e-13 77.4 114 39.5
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 1.4e-12 76.3 115 39.1
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 2.4e-12 75.5 114 43.9
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 2.4e-12 75.5 115 41.7
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 3.1e-12 75.1 114 41.2
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 5.4e-12 74.3 124 42.7
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 5.4e-12 74.3 124 42.7
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 1.2e-11 73.2 115 40.9
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 1.6e-11 72.8 127 38.6
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 3.5e-11 71.6 109 45.0
arahy.Tifrunner.gnm1.ann1.S4G3U6 Arachis hypogaea HOM05D003550 ORTHO05D004336 5.9e-11 70.9 111 45.0
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 1.0e-10 70.1 114 39.5
arahy.Tifrunner.gnm1.ann1.ZL62QC Arachis hypogaea HOM05D003550 ORTHO05D004336 2.3e-10 68.9 37 89.2
SHI04011 Sapria himalayana HOM05D003550 ORTHO05D004336 1.5e-09 66.2 100 44.0
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 1.9e-09 65.9 115 33.0
AUR62044058 Chenopodium quinoa HOM05D003550 ORTHO05D004336 4.0e-07 58.2 35 77.1
arahy.Tifrunner.gnm1.ann1.8B1C3X Arachis hypogaea HOM05D003550 ORTHO05D004336 5.2e-07 57.8 35 82.9
HanXRQChr15g0481021 Helianthus annuus HOM05D003550 ORTHO05D004336 6.8e-07 57.4 35 74.3
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 7.5e-06 53.9 30 76.7


User provided reference genes

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