Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 1.7e-190 669.1 323 100.0
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.1e-181 639.8 324 96.6
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 1.1e-99 367.5 326 61.0
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 9.1e-99 364.4 335 60.3
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 3.6e-95 352.4 335 58.5
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 2.0e-93 346.7 308 58.8
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 5.7e-93 345.1 357 54.6
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 1.2e-90 337.4 312 57.7
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 1.6e-90 337.0 331 55.6
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.1e-87 326.6 306 58.2
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 3.0e-86 322.8 350 53.4
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 6.8e-86 321.6 329 54.7
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 7.0e-75 285.0 334 51.8
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 1.7e-73 280.4 333 48.0
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 1.9e-72 276.9 329 49.2
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 1.2e-71 274.2 329 48.9
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 4.7e-71 272.3 350 46.9
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 1.8e-70 270.4 333 48.0
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 2.3e-70 270.0 325 48.9
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 5.2e-70 268.9 323 50.5
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 8.9e-70 268.1 335 49.0
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 2.6e-69 266.5 325 47.1
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 4.4e-69 265.8 333 47.4
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 8.3e-68 261.5 331 49.8
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 1.1e-67 261.2 359 44.8
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 1.1e-67 261.2 329 48.9
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.4e-67 260.8 328 48.2
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.9e-67 260.4 321 48.9
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 2.4e-67 260.0 327 48.6
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 2.4e-67 260.0 331 46.5
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 9.2e-67 258.1 326 48.2
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 9.2e-67 258.1 329 46.5
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 2.0e-66 256.9 334 47.0
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 4.6e-66 255.8 339 45.4
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 6.0e-66 255.4 326 47.5
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 2.3e-65 253.4 327 47.4
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 3.0e-65 253.1 331 47.7
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 3.9e-65 252.7 338 46.7
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 8.6e-65 251.5 358 44.4
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 1.1e-64 251.1 329 47.7
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 1.5e-64 250.8 350 44.0
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 4.3e-64 249.2 341 44.9
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 9.5e-64 248.1 337 47.5
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 3.6e-63 246.1 349 43.3
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 6.2e-63 245.4 332 45.8
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 1.1e-62 244.6 326 45.7
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 1.4e-62 244.2 303 46.9
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 1.8e-62 243.8 326 45.7
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 1.2e-61 241.1 324 45.1
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 2.0e-61 240.4 324 45.4
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 2.6e-61 240.0 326 44.5
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 9.9e-61 238.0 361 42.7
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 2.2e-60 236.9 328 43.9
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 6.4e-60 235.3 367 40.3
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 1.1e-59 234.6 334 44.9
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 1.9e-59 233.8 325 44.0
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 3.2e-59 233.0 363 41.6
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 2.1e-58 230.3 333 43.5
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 2.7e-58 229.9 339 45.7
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 3.9e-57 226.1 329 44.1
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 1.5e-56 224.2 330 44.2
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 9.5e-56 221.5 338 41.7
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 8.1e-55 218.4 333 43.2
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 1.4e-54 217.6 338 42.3
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.8e-54 217.2 346 40.8
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 5.2e-54 215.7 328 43.3
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 1.5e-53 214.2 353 41.6
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 2.9e-52 209.9 351 41.3
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 5.4e-51 205.7 345 41.4
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 9.2e-51 204.9 336 40.2
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 1.6e-50 204.1 363 39.4
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 6.0e-50 202.2 330 41.8
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 1.3e-49 201.1 330 39.7
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 4.3e-48 196.1 351 39.3
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 4.7e-47 192.6 308 41.2
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 8.1e-47 191.8 353 41.1
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 2.4e-46 190.3 339 38.3
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 1.7e-44 184.1 185 53.0
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 2.2e-44 183.7 148 58.8
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 2.3e-41 173.7 143 58.7
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 8.7e-41 171.8 333 39.6
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 1.5e-40 171.0 323 39.6
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 2.8e-39 166.8 335 37.6
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 1.4e-38 164.5 325 39.4
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 3.1e-38 163.3 341 34.0
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 9.0e-38 161.8 272 42.3
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 9.0e-38 161.8 272 42.3
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 1.3e-36 157.9 150 52.7
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 1.7e-36 157.5 368 34.2
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 8.4e-36 155.2 313 38.3
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 1.1e-35 154.8 326 37.1
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 7.1e-35 152.1 322 33.9
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 1.6e-34 151.0 140 52.9
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 2.1e-34 150.6 342 33.0
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 3.5e-34 149.8 271 35.4
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 7.9e-34 148.7 340 33.2
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 1.8e-33 147.5 249 40.6
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 3.0e-33 146.7 212 43.9
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 3.9e-33 146.4 343 34.7
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 5.1e-33 146.0 322 36.6
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 1.1e-32 144.8 247 41.3
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 1.1e-32 144.8 247 41.3
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 1.5e-32 144.4 151 49.7
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 1.3e-31 141.4 212 41.5
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 1.3e-31 141.4 177 43.5
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 1.6e-31 141.0 249 39.4
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 2.1e-31 140.6 177 42.9
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 3.7e-31 139.8 214 38.8
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 1.4e-30 137.9 127 54.3
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 4.9e-28 129.4 257 38.9
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 8.4e-28 128.6 147 46.9
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.1e-24 118.2 110 55.5
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.9e-24 117.5 261 33.3
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 3.3e-24 116.7 215 37.7
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 2.1e-23 114.0 216 35.2
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 6.2e-23 112.5 213 34.7
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 1.1e-22 111.7 157 42.7
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 5.5e-19 99.4 136 40.4
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 7.1e-19 99.0 112 50.9
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 3.3e-16 90.1 90 55.6
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 4.3e-16 89.7 150 41.3
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 6.1e-10 69.3 167 35.9
ATR0680G098 Amborella trichopoda HOM05D002301 ORTHO05D002316 2.8e-07 60.5 141 29.1
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 1.8e-06 57.8 75 38.7
RcHm_v2.0_Chr2g0138051 Rosa chinensis HOM05D002301 ORTHO05D002316 9.1e-06 55.5 116 28.4


User provided reference genes

Program Settings