Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 2.2e-114 415.6 204 100.0
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 2.5e-110 402.1 220 92.3
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 4.7e-101 371.3 191 93.7
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 6.2e-101 370.9 191 93.7
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 1.0e-100 370.2 191 93.2
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 3.4e-99 365.2 190 91.1
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 9.8e-99 363.6 190 89.5
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 1.7e-98 362.8 190 90.5
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.7e-98 362.8 191 90.6
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 2.2e-98 362.5 190 90.0
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 3.7e-98 361.7 193 88.6
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 4.9e-98 361.3 191 89.5
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 6.4e-98 360.9 190 89.5
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 8.3e-98 360.5 190 89.5
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.1e-97 360.1 190 90.0
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 1.1e-97 360.1 190 89.5
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 1.4e-97 359.8 191 89.5
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 1.4e-97 359.8 189 88.9
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 3.2e-97 358.6 191 89.0
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 3.2e-97 358.6 190 89.5
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 3.2e-97 358.6 190 89.5
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 5.4e-97 357.8 190 87.9
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 5.4e-97 357.8 190 87.4
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 5.4e-97 357.8 191 88.5
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 7.0e-97 357.5 190 88.9
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 1.6e-96 356.3 190 88.4
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 1.6e-96 356.3 190 89.5
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 2.7e-96 355.5 191 88.5
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 3.5e-96 355.1 192 89.1
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 4.6e-96 354.8 188 87.8
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 6.0e-96 354.4 191 91.1
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 7.8e-96 354.0 190 88.4
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 7.8e-96 354.0 191 86.9
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 7.8e-96 354.0 191 86.9
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.0e-95 353.6 190 88.4
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 1.7e-95 352.8 191 87.4
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 2.3e-95 352.4 190 85.8
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 3.0e-95 352.1 190 85.8
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 3.9e-95 351.7 190 88.4
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 3.9e-95 351.7 191 86.9
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 5.0e-95 351.3 190 85.8
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 1.1e-94 350.1 190 87.9
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 1.9e-94 349.4 191 86.4
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 1.9e-94 349.4 191 86.4
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 1.9e-94 349.4 190 87.9
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.9e-94 349.4 191 87.4
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 2.5e-94 349.0 216 79.2
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 3.3e-94 348.6 191 86.4
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 5.6e-94 347.8 190 85.3
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 7.3e-94 347.4 190 84.7
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 7.3e-94 347.4 190 86.8
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 1.6e-93 346.3 191 85.9
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 2.8e-93 345.5 190 84.7
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 2.8e-93 345.5 191 85.9
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 4.7e-93 344.7 190 84.2
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 4.7e-93 344.7 190 84.2
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 4.7e-93 344.7 190 84.2
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 6.2e-93 344.4 190 84.7
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 6.2e-93 344.4 191 84.8
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 8.1e-93 344.0 190 84.2
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 1.1e-92 343.6 190 84.2
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 1.4e-92 343.2 190 84.7
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.4e-92 343.2 191 83.8
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.4e-92 343.2 190 83.7
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 1.8e-92 342.8 190 84.2
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 6.8e-92 340.9 190 83.2
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 1.2e-91 340.1 190 85.3
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.5e-91 339.7 191 84.8
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 2.0e-91 339.3 190 85.8
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 2.6e-91 339.0 190 83.7
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 3.4e-91 338.6 230 73.9
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 4.4e-91 338.2 194 84.0
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 1.7e-90 336.3 191 82.2
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 2.2e-90 335.9 190 82.6
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 4.9e-90 334.7 190 83.7
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.1e-89 333.6 180 87.8
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.4e-89 332.4 207 77.8
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 5.4e-89 331.3 193 81.9
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.6e-88 329.7 190 82.6
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.6e-88 329.7 190 82.6
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 2.7e-88 328.9 191 82.2
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 2.7e-88 328.9 168 94.0
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 6.6e-87 324.3 190 81.1
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 1.6e-85 319.7 244 67.6
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 2.1e-85 319.3 196 78.6
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 2.8e-85 318.9 200 76.5
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 6.2e-85 317.8 200 74.5
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 3.4e-83 312.0 168 86.9
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 4.4e-83 311.6 190 78.4
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.7e-82 309.7 170 87.1
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 2.9e-82 308.9 164 88.4
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 6.4e-82 307.8 191 79.1
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 8.4e-82 307.4 164 84.8
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.6e-80 303.1 177 79.1
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 5.1e-79 298.1 168 83.9
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 8.6e-79 297.4 190 73.7
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 2.1e-77 292.7 156 87.8
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 2.2e-74 282.7 197 70.1
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 3.5e-72 275.4 165 81.2
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.0e-71 272.3 159 83.0
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.8e-69 265.8 157 81.5
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.8e-66 255.4 134 89.6
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 1.1e-65 253.8 136 86.0
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 5.4e-65 251.5 193 66.8
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 3.5e-64 248.8 170 68.8
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.7e-63 246.5 224 58.0
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.9e-62 243.0 164 70.7
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 5.3e-60 235.0 170 64.7
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 9.0e-60 234.2 141 79.4
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 3.4e-59 232.3 170 63.5
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.7e-58 229.9 191 62.8
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 3.2e-57 225.7 173 60.1
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 4.3e-54 215.3 178 56.7
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 5.6e-54 214.9 167 65.9
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.1e-52 210.7 112 86.6
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 4.9e-50 201.8 166 58.4
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 1.8e-44 183.3 125 70.4
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 1.3e-42 177.2 142 54.9
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 6.7e-39 164.9 106 69.8
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 1.1e-38 164.1 145 52.4
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.6e-32 143.7 168 50.0
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.3e-29 134.0 131 54.2
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.0e-27 126.7 131 54.2
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.4e-27 125.9 130 55.4
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 3.8e-26 122.5 126 52.4
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.9e-23 112.5 216 40.3
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.3e-22 109.4 70 70.0
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.8e-21 106.3 133 47.4
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 8.2e-21 104.8 129 48.8
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 2.5e-17 93.2 53 83.0
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 2.1e-16 90.1 57 71.9
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 4.7e-16 89.0 57 73.7
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 4.4e-14 82.4 47 83.0
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 5.5e-09 65.5 33 84.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.0e-07 61.2 99 37.4
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 4.0e-07 59.3 38 76.3


User provided reference genes

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