Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 1.5e-77 292.7 140 100.0
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 3.7e-12 75.5 43 86.0
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 8.2e-12 74.3 43 83.7
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-11 73.9 43 83.7
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 6.9e-11 71.2 57 64.9
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.2e-10 70.5 59 59.3
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.5e-10 70.1 63 58.7
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 2.0e-10 69.7 43 79.1
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.6e-10 69.3 43 79.1
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 5.9e-10 68.2 43 76.7
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 5.9e-10 68.2 43 76.7
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 5.9e-10 68.2 43 76.7
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.3e-09 67.0 43 76.7
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.9e-09 65.9 43 72.1
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 3.8e-09 65.5 56 60.7
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 3.8e-09 65.5 43 74.4
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 3.8e-09 65.5 39 82.1
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 5.0e-09 65.1 43 72.1
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 6.5e-09 64.7 43 74.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 6.5e-09 64.7 43 74.4
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 8.5e-09 64.3 43 72.1
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.4e-08 63.5 55 60.0
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.9e-08 63.2 43 69.8
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.9e-08 63.2 43 72.1
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.9e-08 63.2 57 56.1
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.9e-08 63.2 50 64.0
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.5e-08 62.8 47 66.0
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 4.2e-08 62.0 43 67.4
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 4.2e-08 62.0 43 67.4
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 4.2e-08 62.0 43 67.4
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 4.2e-08 62.0 86 43.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 4.2e-08 62.0 43 69.8
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 5.5e-08 61.6 47 61.7
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 5.5e-08 61.6 43 65.1
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 5.5e-08 61.6 50 64.0
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 7.2e-08 61.2 43 65.1
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 7.2e-08 61.2 43 65.1
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 7.2e-08 61.2 43 67.4
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 7.2e-08 61.2 39 69.2
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 9.3e-08 60.8 50 60.0
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 9.3e-08 60.8 42 69.0
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 9.3e-08 60.8 42 69.0
arahy.Tifrunner.gnm1.ann1.J3CDPM Arachis hypogaea HOM05D003661 ORTHO05D004201 1.2e-07 60.5 47 61.7
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.2e-07 60.5 43 67.4
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.2e-07 60.5 43 69.8
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.2e-07 60.5 43 65.1
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.6e-07 60.1 50 64.0
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.6e-07 60.1 42 66.7
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.6e-07 60.1 43 65.1
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.6e-07 60.1 43 65.1
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.6e-07 60.1 43 67.4
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 2.1e-07 59.7 47 66.0
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 2.1e-07 59.7 50 62.0
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 2.1e-07 59.7 47 61.7
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 2.7e-07 59.3 43 67.4
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 2.7e-07 59.3 44 65.9
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.7e-07 59.3 43 67.4
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.7e-07 59.3 43 67.4
arahy.Tifrunner.gnm1.ann1.N1HJL5 Arachis hypogaea HOM05D003661 ORTHO05D004201 3.6e-07 58.9 64 50.0
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 3.6e-07 58.9 57 50.9
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 3.6e-07 58.9 57 50.9
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.6e-07 58.9 41 68.3
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.6e-07 58.9 44 65.9
arahy.Tifrunner.gnm1.ann1.R3RK93 Arachis hypogaea HOM05D003661 ORTHO05D004201 4.6e-07 58.5 62 50.0
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 4.6e-07 58.5 50 64.0
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 6.1e-07 58.2 43 65.1
arahy.Tifrunner.gnm1.ann1.A8PSST Arachis hypogaea HOM05D003661 ORTHO05D004201 6.1e-07 58.2 79 44.3
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 6.1e-07 58.2 49 61.2
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 6.1e-07 58.2 43 62.8
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 7.9e-07 57.8 91 40.7
arahy.Tifrunner.gnm1.ann1.XA3L7J Arachis hypogaea HOM05D003661 ORTHO05D004201 7.9e-07 57.8 31 80.6
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 7.9e-07 57.8 39 69.2
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.3e-06 57.0 43 60.5
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-06 57.0 57 54.4
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-06 57.0 57 54.4
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.8e-06 56.6 44 56.8
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.8e-06 56.6 57 45.6
arahy.Tifrunner.gnm1.ann1.0849LN Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.0P3JKK Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.1P7EYR Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.26DKG9 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.3AVD3Y Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.86GCE0 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.90MGLP Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.9HE0E6 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.DCM3B8 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.ERWS99 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.F6FK5R Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.G0MZ03 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.I0LPD8 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.I52KU9 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.IKTL0T Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.JI5W2T Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.MZ2ML2 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.NN0VTS Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.NR5RG3 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.NZ01WB Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.REL9YU Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.SK09KG Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.SYC40S Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.TCJP60 Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
arahy.Tifrunner.gnm1.ann1.YYI5CI Arachis hypogaea HOM05D003661 ORTHO05D004201 1.8e-06 56.6 24 100.0
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.8e-06 56.6 43 60.5
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.8e-06 56.6 43 62.8
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.8e-06 56.6 47 61.7
arahy.Tifrunner.gnm1.ann1.3SVP7J Arachis hypogaea HOM05D003661 ORTHO05D004201 2.3e-06 56.2 24 95.8
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 2.3e-06 56.2 43 62.8
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.3e-06 56.2 43 62.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 2.3e-06 56.2 43 62.8
arahy.Tifrunner.gnm1.ann1.9B4F3D Arachis hypogaea HOM05D003661 ORTHO05D004201 3.0e-06 55.8 26 92.3
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 3.0e-06 55.8 47 61.7
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 3.0e-06 55.8 50 58.0
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 3.9e-06 55.5 47 61.7
arahy.Tifrunner.gnm1.ann1.0TXC5G Arachis hypogaea HOM05D003661 ORTHO05D004201 5.1e-06 55.1 24 95.8
arahy.Tifrunner.gnm1.ann1.8UC82Y Arachis hypogaea HOM05D003661 ORTHO05D004201 5.1e-06 55.1 24 95.8
arahy.Tifrunner.gnm1.ann1.9Q1YWA Arachis hypogaea HOM05D003661 ORTHO05D004201 5.1e-06 55.1 24 95.8
arahy.Tifrunner.gnm1.ann1.HJ1D03 Arachis hypogaea HOM05D003661 ORTHO05D004201 5.1e-06 55.1 23 100.0
arahy.Tifrunner.gnm1.ann1.L6CSV6 Arachis hypogaea HOM05D003661 ORTHO05D004201 5.1e-06 55.1 24 95.8
arahy.Tifrunner.gnm1.ann1.T2JQ0Z Arachis hypogaea HOM05D003661 ORTHO05D004201 5.1e-06 55.1 24 95.8
arahy.Tifrunner.gnm1.ann1.UZK8PU Arachis hypogaea HOM05D003661 ORTHO05D004201 5.1e-06 55.1 24 95.8
arahy.Tifrunner.gnm1.ann1.YZJ798 Arachis hypogaea HOM05D003661 ORTHO05D004201 5.1e-06 55.1 24 95.8
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 5.1e-06 55.1 43 60.5
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 5.1e-06 55.1 47 55.3
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 5.1e-06 55.1 43 62.8
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 5.1e-06 55.1 43 62.8
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 5.1e-06 55.1 42 61.9
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 5.1e-06 55.1 43 60.5
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 6.7e-06 54.7 24 100.0
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 6.7e-06 54.7 43 60.5
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 6.7e-06 54.7 50 58.0
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 6.7e-06 54.7 57 52.6
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.7e-06 54.7 57 52.6
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.7e-06 54.7 57 52.6
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.7e-06 54.7 57 52.6
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.7e-06 54.7 57 52.6
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.7e-06 54.7 57 52.6
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 6.7e-06 54.7 57 52.6
arahy.Tifrunner.gnm1.ann1.438J26 Arachis hypogaea HOM05D003661 ORTHO05D004201 8.7e-06 54.3 24 95.8
arahy.Tifrunner.gnm1.ann1.C3G94V Arachis hypogaea HOM05D003661 ORTHO05D004201 8.7e-06 54.3 24 95.8
arahy.Tifrunner.gnm1.ann1.EPN60A Arachis hypogaea HOM05D003661 ORTHO05D004201 8.7e-06 54.3 24 95.8
arahy.Tifrunner.gnm1.ann1.FJSM0P Arachis hypogaea HOM05D003661 ORTHO05D004201 8.7e-06 54.3 24 95.8
arahy.Tifrunner.gnm1.ann1.I6EX7J Arachis hypogaea HOM05D003661 ORTHO05D004201 8.7e-06 54.3 24 91.7
arahy.Tifrunner.gnm1.ann1.Q7JM8R Arachis hypogaea HOM05D003661 ORTHO05D004201 8.7e-06 54.3 24 95.8
arahy.Tifrunner.gnm1.ann1.U4C43H Arachis hypogaea HOM05D003661 ORTHO05D004201 8.7e-06 54.3 24 95.8


User provided reference genes

Program Settings