Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 0.0e+00 1148.7 601 100.0
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 0.0e+00 1140.2 601 99.3
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 0.0e+00 1122.1 602 97.8
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 0.0e+00 1116.7 603 97.5
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.0e-293 1011.9 601 88.9
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.7e-292 1008.8 602 87.5
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 8.5e-292 1006.5 601 88.5
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 3.2e-291 1004.6 605 87.8
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.7e-290 1001.5 601 88.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.5e-288 995.7 605 86.6
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 4.4e-288 994.2 601 87.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 6.3e-287 990.3 605 86.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.0e-284 983.0 606 86.1
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.5e-275 951.8 603 84.4
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.0e-269 932.2 602 82.6
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 2.9e-268 928.3 589 82.7
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 9.5e-267 923.3 589 83.2
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 3.6e-266 921.4 589 81.0
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.6e-266 921.4 600 82.0
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.8e-265 919.1 599 81.6
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 2.3e-265 918.7 596 80.2
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 3.0e-265 918.3 589 81.2
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.0e-265 917.9 589 82.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 7.5e-264 913.7 589 82.0
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.3e-263 912.9 589 81.0
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 4.9e-263 911.0 594 80.5
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.4e-263 910.6 589 81.8
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.4e-262 908.7 589 81.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 4.1e-262 907.9 598 79.9
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.2e-261 906.4 589 80.5
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 4.6e-261 904.4 598 79.6
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 5.9e-261 904.0 600 79.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 3.9e-260 901.4 590 79.5
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 5.0e-260 901.0 589 80.5
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 5.0e-260 901.0 587 79.7
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 1.1e-259 899.8 589 80.3
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.3e-259 897.9 589 79.6
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 4.3e-259 897.9 588 80.8
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.2e-258 896.3 597 78.7
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.5e-256 889.4 601 78.0
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.0e-256 889.0 593 78.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.4e-256 888.3 596 78.5
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 7.5e-256 887.1 589 79.5
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.8e-256 886.7 589 78.4
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.7e-255 885.9 589 78.4
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.2e-254 881.7 565 80.4
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.6e-253 877.9 588 78.2
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.3e-252 876.3 590 78.8
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 3.0e-252 875.2 594 77.3
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.9e-251 872.5 597 77.4
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.5e-251 872.1 596 76.3
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.3e-251 871.7 597 77.1
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 9.5e-251 870.2 589 77.4
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 6.2e-250 867.5 591 75.6
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.4e-249 866.3 594 75.3
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 4.0e-249 864.8 589 76.1
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 6.8e-249 864.0 699 68.2
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-248 863.2 594 75.3
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.2e-248 863.2 601 75.0
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 2.0e-248 862.4 588 75.0
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.0e-248 862.4 588 76.4
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 3.4e-248 861.7 591 76.0
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.4e-248 861.7 588 75.7
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 3.4e-248 861.7 590 75.8
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 4.9e-247 857.8 589 74.9
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-246 856.7 587 75.0
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.1e-246 856.7 597 75.0
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 5.4e-246 854.4 594 74.4
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.2e-245 853.2 589 74.5
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 4.6e-245 851.3 637 71.9
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 7.8e-245 850.5 603 73.6
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.0e-244 850.1 590 75.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 8.6e-244 847.0 597 74.0
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.9e-243 845.9 600 73.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 2.1e-242 842.4 590 74.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.8e-242 842.0 593 75.0
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 3.6e-242 841.6 592 74.3
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 6.2e-242 840.9 694 66.6
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-241 840.1 592 74.2
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 1.4e-241 839.7 585 74.5
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 3.4e-240 835.1 508 83.3
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 5.8e-240 834.3 594 73.6
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 9.9e-240 833.6 590 73.4
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.3e-239 833.2 583 74.4
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.7e-239 832.8 589 74.5
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 6.4e-239 830.9 581 74.2
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.9e-238 829.3 580 74.8
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.4e-238 828.9 563 76.4
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 2.4e-238 828.9 597 73.9
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.1e-238 828.2 589 72.0
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 7.1e-238 827.4 597 73.7
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.1e-237 825.9 577 74.7
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.5e-237 825.1 590 72.0
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.0e-236 823.5 598 73.4
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.3e-236 823.2 593 74.4
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.3e-236 822.4 575 75.0
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.0e-236 822.0 594 73.2
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 3.9e-236 821.6 597 72.9
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 3.4e-232 808.5 591 71.2
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 4.4e-232 808.1 590 70.3
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 4.4e-232 808.1 599 71.0
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 9.9e-232 807.0 589 73.7
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.3e-231 806.6 597 71.0
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.9e-231 805.4 612 70.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 2.7e-229 798.9 592 71.8
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 5.1e-228 794.7 511 78.9
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 5.6e-227 791.2 595 71.1
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.8e-226 788.9 596 71.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 9.0e-225 783.9 596 70.8
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.4e-222 775.8 596 70.3
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.2e-222 775.4 599 69.9
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 9.3e-222 773.9 591 69.2
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.2e-215 752.7 564 71.3
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.2e-215 752.7 574 69.5
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 9.3e-214 747.3 587 67.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 6.7e-212 741.1 592 67.6
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.6e-205 719.9 592 65.9
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.1e-201 705.7 601 65.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 7.6e-200 701.0 588 65.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.1e-197 693.0 522 69.5
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 8.2e-186 654.4 510 69.0
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 8.5e-183 644.4 448 74.6
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 2.6e-179 632.9 433 77.1
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.6e-173 612.5 477 66.2
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.0e-171 606.7 507 66.7
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 3.0e-164 582.8 526 60.6
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 4.4e-163 578.9 374 80.7
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 9.5e-158 561.2 372 76.1
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.1e-150 537.7 589 56.7
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 2.3e-143 513.5 518 52.5
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 8.9e-132 474.9 400 65.5
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.1e-125 453.8 329 74.2
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 8.1e-117 425.2 309 72.2
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.7e-114 417.5 252 84.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.7e-112 410.2 521 47.4
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 4.2e-97 359.8 568 41.2
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 6.0e-96 355.9 226 78.3
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 8.4e-90 335.5 229 75.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.6e-80 303.5 246 66.3
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 2.4e-76 290.8 210 68.6
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.2e-65 253.8 258 51.9
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.4e-60 237.7 324 42.6
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 9.1e-52 209.1 130 80.8
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.0e-47 195.7 266 44.4
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 6.3e-37 159.8 131 64.1
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 8.9e-31 139.4 137 57.7
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 4.7e-24 117.1 103 67.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.1e-23 114.4 187 41.7
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 9.8e-22 109.4 101 65.3
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 8.3e-21 106.3 207 38.2
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.1e-17 95.9 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.1e-17 95.9 52 90.4
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.5e-17 95.5 81 61.7
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.3e-17 94.4 50 82.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 9.9e-14 82.8 52 80.8
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 9.2e-12 76.3 60 63.3
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 7.8e-11 73.2 74 51.4
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.0e-10 72.8 74 51.4
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 6.6e-10 70.1 74 50.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.2e-08 65.9 57 54.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.6e-08 65.5 30 96.7
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.6e-08 65.5 30 96.7
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 4.7e-08 63.9 57 56.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.8e-07 62.0 244 29.1
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 2.6e-06 58.2 51 64.7
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 3.4e-06 57.8 51 45.1


User provided reference genes

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